Variant report

Variant	rs859629
Chromosome Location	chr1:172720345-172720346
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1102704	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2077690	0.88[CHB][hapmap]
rs2131375	0.88[CHB][hapmap]
rs704841	0.88[CHB][hapmap]
rs704847	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859622	0.86[EUR][1000 genomes]
rs859631	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs859633	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs859641	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs859723	0.88[CHB][hapmap]
rs859724	0.88[CHB][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172716400-172729400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:172716600-172722200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:172716800-172723400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:172717000-172722800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:172717000-172723200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:172719000-172723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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