Variant report

Variant	rs859725
Chromosome Location	chr1:172734598-172734599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1102722	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102729	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12145987	0.84[AFR][1000 genomes]
rs704843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs859624	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs859725	C1orf129	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172731000-172735400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:172731400-172735200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:172732400-172734800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:172732600-172735000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:172733000-172734600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:172733000-172734800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:172733000-172734800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:172733000-172736200	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:172733200-172736000	Enhancers	Primary B cells from cord blood	blood
10	chr1:172734000-172738800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:172734000-172739000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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