The 2.0 version of rSNPBase

Variant report

Variant rs860873
Chromosome Location chr1:95387208-95387209
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95357800-95390800 Weak transcription Primary hematopoietic stem cells blood
2 chr1:95364000-95388600 Weak transcription Fetal Brain Male brain
3 chr1:95368400-95388400 Weak transcription Fetal Intestine Large intestine
4 chr1:95368400-95390600 Weak transcription Fetal Thymus thymus
5 chr1:95369000-95388200 Weak transcription Fetal Brain Female brain
6 chr1:95378600-95388600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:95381600-95387400 Weak transcription Psoas Muscle Psoas
8 chr1:95383400-95388000 Genic enhancers Fetal Muscle Leg muscle
9 chr1:95383400-95388000 Enhancers Ovary ovary
10 chr1:95383400-95389400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:95384400-95387400 Enhancers Fetal Adrenal Gland Adrenal Gland
12 chr1:95384600-95387400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:95384600-95388000 Enhancers Adipose Nuclei Adipose
14 chr1:95384600-95388400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:95384600-95389400 Genic enhancers HepG2 liver
16 chr1:95384800-95387600 Enhancers Brain Cingulate Gyrus brain
17 chr1:95384800-95388600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:95384800-95389400 Enhancers Brain Substantia Nigra brain
19 chr1:95385000-95388400 Enhancers Rectal Mucosa Donor 31 rectum
20 chr1:95385200-95387600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:95385200-95388600 Weak transcription Fetal Intestine Small intestine
22 chr1:95385400-95387400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:95385400-95387400 Weak transcription Lung lung
24 chr1:95385400-95389400 Weak transcription Colonic Mucosa Colon
25 chr1:95385600-95388000 Weak transcription Brain Germinal Matrix brain
26 chr1:95385600-95388400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:95385600-95388600 Genic enhancers HUES64 Cell Line embryonic stem cell
28 chr1:95385600-95388600 Weak transcription Gastric stomach
29 chr1:95385600-95389400 Weak transcription Spleen Spleen
30 chr1:95385600-95390600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr1:95385800-95387600 Enhancers Rectal Mucosa Donor 29 rectum
32 chr1:95385800-95387800 Genic enhancers iPS-20b Cell Line embryonic stem cell
33 chr1:95385800-95387800 Enhancers Stomach Smooth Muscle stomach
34 chr1:95386000-95387400 Weak transcription Right Atrium heart
35 chr1:95386000-95387400 Weak transcription Stomach Mucosa stomach
36 chr1:95386000-95387400 Strong transcription HUVEC blood vessel
37 chr1:95386000-95388200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:95386000-95388200 Weak transcription Placenta Placenta
39 chr1:95386000-95388200 Weak transcription Right Ventricle heart
40 chr1:95386000-95388200 Genic enhancers Osteobl bone
41 chr1:95386000-95388400 Weak transcription Fetal Kidney kidney
42 chr1:95386000-95388400 Weak transcription A549 lung
43 chr1:95386000-95389400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:95386000-95389400 Weak transcription Esophagus oesophagus
45 chr1:95386200-95387400 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:95386200-95388200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr1:95386200-95388200 Weak transcription Fetal Lung lung
48 chr1:95386200-95388400 Weak transcription Fetal Stomach stomach
49 chr1:95386200-95388600 Weak transcription Brain Inferior Temporal Lobe brain
50 chr1:95386200-95388800 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015