Variant report

Variant	rs861467
Chromosome Location	chr1:175811541-175811542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175803143..175807498-chr1:175810197..175814751,4	K562	blood:
2	chr1:175810148..175812202-chr1:175822925..175825364,2	K562	blood:
3	chr1:175811108..175813119-chr1:176318373..176320354,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs475143	0.82[AFR][1000 genomes]
rs485654	0.82[AFR][1000 genomes]
rs515031	0.82[AFR][1000 genomes]
rs537560	0.82[AFR][1000 genomes]
rs562631	0.87[AFR][1000 genomes]
rs571297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175806600-175817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:175808200-175811600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:175808800-175812000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:175808800-175812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:175809000-175812000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:175809400-175811600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:175809400-175811800	Enhancers	Fetal Brain Female	brain
8	chr1:175809400-175811800	Enhancers	Fetal Intestine Small	intestine
9	chr1:175809400-175814800	Enhancers	Fetal Intestine Large	intestine
10	chr1:175809600-175811600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:175810400-175812400	Enhancers	Fetal Brain Male	brain
12	chr1:175810600-175811600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:175810600-175811600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:175810600-175811800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:175810600-175811800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:175810600-175812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:175810800-175811600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:175810800-175811800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:175810800-175812000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr1:175811400-175811800	Enhancers	Primary hematopoietic stem cells	blood
21	chr1:175811400-175815800	Enhancers	Hela-S3	cervix

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