Variant report

Variant	rs862994
Chromosome Location	chr1:159165336-159165337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159159900..159162596-chr1:159164063..159165886,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs862990	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862991	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862995	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862996	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs862999	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159157800-159167600	Weak transcription	Spleen	Spleen
2	chr1:159158400-159174000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:159158800-159171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:159158800-159177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:159158800-159177800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:159159000-159165800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:159159000-159168000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:159159400-159169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:159159600-159173200	Strong transcription	Fetal Brain Female	brain
11	chr1:159161000-159167600	Weak transcription	Placenta	Placenta
12	chr1:159161600-159167600	Strong transcription	Brain Anterior Caudate	brain
13	chr1:159161800-159170000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:159163000-159173800	Weak transcription	Fetal Brain Male	brain
15	chr1:159163800-159166600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:159163800-159167800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:159163800-159169400	Weak transcription	Fetal Stomach	stomach
18	chr1:159164000-159167600	Weak transcription	Brain Angular Gyrus	brain
19	chr1:159164200-159172600	Strong transcription	Brain Germinal Matrix	brain
20	chr1:159164800-159165400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:159165200-159166400	Enhancers	Brain Hippocampus Middle	brain
22	chr1:159165200-159166400	Enhancers	Brain Substantia Nigra	brain

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