Variant report

Variant	rs863032
Chromosome Location	chr1:159112144-159112145
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr1:159111501-159112160	H1-hESC	embryonic stem cell:	n/a	chr1:159111588-159111602
2	GATA1	chr1:159112051-159112559	PBDE	blood:	n/a	n/a
3	REST	chr1:159110601-159113910	H1-neurons	neurons:	n/a	chr1:159113230-159113238 chr1:159111952-159111960
4	TAF1	chr1:159111334-159112484	H1-neurons	neurons:	n/a	n/a
5	TAF1	chr1:159111244-159112541	H1-neurons	neurons:	n/a	n/a
6	REST	chr1:159111402-159112630	H1-neurons	neurons:	n/a	chr1:159111952-159111960
7	GATA2	chr1:159110789-159112370	SH-SY5Y	brain:	n/a	chr1:159111743-159111753
8	POLR2A	chr1:159111248-159113227	H1-neurons	neurons:	n/a	n/a
9	POLR2A	chr1:159111233-159112882	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
AIM2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1103578	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs863030	0.86[EUR][1000 genomes]
rs863035	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs863036	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs863039	0.88[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159110200-159113400	Active TSS	Fetal Brain Female	brain
2	chr1:159110600-159112800	Active TSS	Fetal Brain Male	brain
3	chr1:159110800-159112200	Active TSS	Brain Germinal Matrix	brain
4	chr1:159111000-159112400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:159111200-159112800	Active TSS	Brain Anterior Caudate	brain
6	chr1:159111200-159112800	Active TSS	Brain Cingulate Gyrus	brain
7	chr1:159111200-159112800	Active TSS	Brain Hippocampus Middle	brain
8	chr1:159111400-159112200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:159111400-159112200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:159111400-159112800	Active TSS	Brain Angular Gyrus	brain
11	chr1:159111600-159112200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:159111600-159112200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:159111600-159112200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:159111600-159112200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr1:159111600-159112200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
16	chr1:159111600-159112200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:159111600-159112200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr1:159111600-159112200	Bivalent/Poised TSS	Fetal Stomach	stomach
19	chr1:159111600-159112200	Bivalent/Poised TSS	HSMMtube	muscle
20	chr1:159111600-159112200	Active TSS	NH-A	brain
21	chr1:159111600-159112200	Bivalent/Poised TSS	NHEK	skin
22	chr1:159111600-159112200	Bivalent/Poised TSS	Osteobl	bone
23	chr1:159111600-159112800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:159111800-159112200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr1:159111800-159112200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:159111800-159112200	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr1:159111800-159112200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
28	chr1:159111800-159112200	Bivalent Enhancer	Lung	lung
29	chr1:159111800-159112200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
30	chr1:159111800-159112400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:159111800-159112400	Flanking Active TSS	HMEC	breast
32	chr1:159111800-159112600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:159112000-159112200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr1:159112000-159112200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:159112000-159112200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:159112000-159112200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr1:159112000-159112200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr1:159112000-159112200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr1:159112000-159112200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:159112000-159112200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr1:159112000-159112200	Bivalent Enhancer	Adipose Nuclei	Adipose
42	chr1:159112000-159112400	Enhancers	H1 Cell Line	embryonic stem cell

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