Variant report

Variant	rs864335
Chromosome Location	chr1:97695794-97695795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10783056	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10875056	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10875057	0.88[ASN][1000 genomes]
rs10875058	0.87[ASN][1000 genomes]
rs11165815	0.84[ASN][1000 genomes]
rs12402250	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12403951	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1333727	0.83[EUR][1000 genomes]
rs1413239	0.85[EUR][1000 genomes]
rs1520658	0.96[ASN][1000 genomes]
rs1520663	0.84[ASN][1000 genomes]
rs1520664	0.84[ASN][1000 genomes]
rs1760212	0.84[ASN][1000 genomes]
rs1931072	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2027054	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2039447	0.85[EUR][1000 genomes]
rs2039448	0.85[EUR][1000 genomes]
rs3897933	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4511173	0.85[EUR][1000 genomes]
rs493517	0.82[ASN][1000 genomes]
rs495257	0.82[ASN][1000 genomes]
rs563033	0.84[ASN][1000 genomes]
rs563832	0.84[ASN][1000 genomes]
rs576189	0.84[ASN][1000 genomes]
rs61637399	0.85[EUR][1000 genomes]
rs666924	0.84[ASN][1000 genomes]
rs827497	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs865242	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs866129	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533039	chr1:97665736-98343102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97659000-97697000	Weak transcription	Liver	Liver
2	chr1:97659800-97696000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:97660600-97698600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:97663600-97698600	Weak transcription	Primary T cells from cord blood	blood
5	chr1:97666600-97697400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:97678200-97698600	Weak transcription	Left Ventricle	heart
7	chr1:97678400-97697400	Weak transcription	Dnd41	blood
8	chr1:97690400-97698800	Weak transcription	Brain Substantia Nigra	brain
9	chr1:97690800-97698600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:97691200-97695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:97691400-97698600	Weak transcription	Gastric	stomach
12	chr1:97691400-97701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:97691400-97702600	Weak transcription	Fetal Intestine Small	intestine
14	chr1:97692800-97703400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:97693000-97701800	Weak transcription	Fetal Lung	lung
16	chr1:97693200-97700800	Weak transcription	Pancreas	Pancrea
17	chr1:97694000-97699600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:97694400-97698800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:97694600-97698600	Weak transcription	Ovary	ovary
20	chr1:97694800-97698000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:97694800-97698600	Weak transcription	Adipose Nuclei	Adipose
22	chr1:97694800-97698600	Weak transcription	Esophagus	oesophagus
23	chr1:97694800-97698800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:97694800-97698800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:97694800-97701000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:97694800-97712800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:97695000-97698600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:97695000-97698600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:97695000-97698600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr1:97695400-97698800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:97695600-97697800	Strong transcription	Primary B cells from cord blood	blood

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