Variant report

Variant	rs864472
Chromosome Location	chr2:173591763-173591764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs836645	0.89[AMR][1000 genomes]
rs865641	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173588800-173600200	Weak transcription	Aorta	Aorta
2	chr2:173589800-173592400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:173590400-173592000	Enhancers	Fetal Intestine Small	intestine
4	chr2:173590400-173592200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:173590400-173592200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:173590400-173592200	Enhancers	Fetal Intestine Large	intestine
7	chr2:173590600-173592000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173590600-173592000	Enhancers	Liver	Liver
9	chr2:173590800-173591800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:173590800-173591800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:173590800-173592000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:173591000-173591800	Enhancers	HSMMtube	muscle
13	chr2:173591000-173592000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:173591200-173592200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:173591400-173594200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:173591400-173599800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:173591600-173591800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr2:173591600-173592000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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