Variant report

Variant	rs865363
Chromosome Location	chr3:112463424-112463425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112461762..112464702-chr3:112469113..112471587,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1387020	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6800139	0.81[EUR][1000 genomes]
rs712527	0.91[ASN][1000 genomes]
rs751108	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820547	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs820552	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs820555	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112454200-112463800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:112456400-112464000	Weak transcription	K562	blood
3	chr3:112458400-112465600	Weak transcription	NHLF	lung
4	chr3:112458400-112467800	Weak transcription	Stomach Mucosa	stomach
5	chr3:112458800-112467200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:112459000-112463800	Weak transcription	Thymus	Thymus
7	chr3:112459000-112464000	Weak transcription	GM12878-XiMat	blood
8	chr3:112459000-112467000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:112459000-112470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:112459200-112466400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:112459200-112467800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:112460200-112464800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:112460800-112465600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:112461400-112466400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:112461400-112466400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:112461800-112465800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:112462600-112464200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:112462600-112464800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:112462600-112468000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:112462800-112463800	Enhancers	Left Ventricle	heart
21	chr3:112462800-112464600	Enhancers	Fetal Lung	lung
22	chr3:112462800-112464600	Enhancers	Fetal Stomach	stomach
23	chr3:112463000-112463800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:112463000-112463800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:112463000-112464200	Enhancers	Fetal Muscle Leg	muscle
26	chr3:112463000-112465800	Enhancers	Fetal Thymus	thymus
27	chr3:112463000-112465800	Enhancers	NHDF-Ad	bronchial
28	chr3:112463200-112463600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr3:112463400-112463800	Weak transcription	Osteobl	bone
30	chr3:112463400-112465000	Enhancers	HUES48 Cell Line	embryonic stem cell

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