Variant report

Variant	rs865462
Chromosome Location	chr8:104314488-104314489
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104313517..104316996-chr8:104385407..104388642,4	MCF-7	breast:
2	chr8:104313102..104315253-chr8:104317116..104318953,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1004468	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10505042	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1053917	0.90[ASN][1000 genomes]
rs10808383	0.86[AFR][1000 genomes]
rs1095713	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1095714	0.96[ASN][1000 genomes]
rs11781252	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11987172	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12164188	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12546491	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12550097	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1357354	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370008	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1370009	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1464550	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1464552	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1522708	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1522710	0.96[ASN][1000 genomes]
rs1522711	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1522712	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16870346	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1851483	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1916117	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2010308	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2388532	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2642363	0.96[ASN][1000 genomes]
rs2642364	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2642366	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2642368	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2687351	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28392906	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2917550	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2934719	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2948447	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3133827	0.91[ASN][1000 genomes]
rs35019987	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35935697	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3736047	0.98[ASN][1000 genomes]
rs3808553	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3808554	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3808556	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3808559	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4734698	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62525498	0.82[ASN][1000 genomes]
rs62525511	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7008838	0.94[ASN][1000 genomes]
rs7012843	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs827530	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs827534	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs827535	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs827536	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs827539	0.84[EUR][1000 genomes]
rs827547	0.88[EUR][1000 genomes]
rs827550	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs827552	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs827554	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs827578	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827579	0.87[ASN][1000 genomes]
rs827580	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827581	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827582	0.87[ASN][1000 genomes]
rs827583	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs827584	0.87[ASN][1000 genomes]
rs827586	0.85[EUR][1000 genomes]
rs827587	0.85[EUR][1000 genomes]
rs827588	0.85[EUR][1000 genomes]
rs844136	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs865461	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1023181	chr8:104298542-104366365	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104311600-104343600	Weak transcription	Spleen	Spleen
2	chr8:104311800-104320000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:104311800-104320200	Weak transcription	Placenta	Placenta
4	chr8:104311800-104320200	Weak transcription	HSMM	muscle
5	chr8:104311800-104321200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:104311800-104327800	Weak transcription	Pancreas	Pancrea
7	chr8:104311800-104331200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:104311800-104331400	Weak transcription	Liver	Liver
9	chr8:104311800-104331400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:104311800-104343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:104312000-104316400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:104312000-104326600	Weak transcription	Gastric	stomach
13	chr8:104312000-104337200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:104312000-104337200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:104312000-104343800	Weak transcription	Small Intestine	intestine
16	chr8:104312000-104348400	Weak transcription	Thymus	Thymus
17	chr8:104312000-104350200	Weak transcription	Esophagus	oesophagus
18	chr8:104312200-104317600	Weak transcription	Fetal Intestine Large	intestine
19	chr8:104312200-104320000	Weak transcription	Left Ventricle	heart
20	chr8:104312200-104320600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:104312200-104337200	Weak transcription	Brain Anterior Caudate	brain
22	chr8:104312200-104337800	Weak transcription	Primary T cells from cord blood	blood
23	chr8:104312200-104339000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:104312400-104317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:104312400-104317400	Weak transcription	Brain Substantia Nigra	brain
26	chr8:104312400-104319800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:104312400-104331400	Weak transcription	Fetal Stomach	stomach
28	chr8:104312400-104332600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:104312400-104345000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:104312400-104345000	Weak transcription	Right Ventricle	heart
31	chr8:104312400-104350000	Weak transcription	Lung	lung
32	chr8:104312600-104316600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:104312600-104317200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:104312600-104317400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:104312600-104319200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr8:104312600-104320000	Weak transcription	Ovary	ovary
37	chr8:104312600-104320800	Weak transcription	Adipose Nuclei	Adipose
38	chr8:104312600-104327400	Weak transcription	A549	lung
39	chr8:104312600-104337200	Weak transcription	Brain Angular Gyrus	brain
40	chr8:104312600-104342400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr8:104312600-104344800	Weak transcription	Fetal Intestine Small	intestine
42	chr8:104312600-104350000	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:104312800-104316400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:104312800-104317400	Weak transcription	Fetal Heart	heart
45	chr8:104312800-104318200	Weak transcription	Hela-S3	cervix
46	chr8:104312800-104319000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr8:104312800-104322000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:104313000-104319000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr8:104313000-104319800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr8:104313200-104315000	Weak transcription	Osteobl	bone

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