Variant report

Variant	rs867711
Chromosome Location	chr4:62407399-62407400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1391321	0.85[JPT][hapmap]
rs17090504	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs28540500	0.86[EUR][1000 genomes]
rs28684820	0.86[EUR][1000 genomes]
rs67283284	0.86[EUR][1000 genomes]
rs958862	0.85[JPT][hapmap]
rs9994628	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62404800-62408000	Enhancers	Fetal Intestine Small	intestine
2	chr4:62405400-62408400	Enhancers	Fetal Intestine Large	intestine
3	chr4:62406000-62407600	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr4:62406200-62407600	Enhancers	Fetal Heart	heart
5	chr4:62406400-62407400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:62406400-62407400	Enhancers	Duodenum Mucosa	Duodenum
7	chr4:62406400-62407600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:62406400-62408000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:62406600-62407400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:62406600-62407400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:62406600-62407400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:62406600-62407600	Enhancers	HepG2	liver
13	chr4:62406800-62407400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:62406800-62407600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr4:62406800-62407800	Enhancers	Stomach Mucosa	stomach
16	chr4:62407000-62407400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:62407000-62408400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:62407000-62408400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:62407000-62409200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:62407000-62411000	Weak transcription	Left Ventricle	heart
21	chr4:62407000-62421600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:62407200-62409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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