Variant report

Variant	rs868668
Chromosome Location	chr11:73462328-73462329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73458899..73465006-chr11:73467540..73472378,9	K562	blood:
2	chr11:73461170..73462762-chr11:73468123..73470222,2	MCF-7	breast:
3	chr11:73460588..73463115-chr11:73499675..73501520,2	MCF-7	breast:
4	chr11:73458119..73460302-chr11:73461277..73464181,2	K562	blood:
5	chr11:73459700..73464671-chr11:73465982..73472131,6	K562	blood:
6	chr11:73421710..73424009-chr11:73461398..73464221,2	K562	blood:

Variant related genes	Relation type
ENSG00000256034	Chromatin interaction
ENSG00000175582	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10437751	0.83[ASN][1000 genomes]
rs10898942	0.89[ASN][1000 genomes]
rs11235880	0.81[ASN][1000 genomes]
rs12285303	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7127066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479542	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72976886	0.80[ASN][1000 genomes]
rs7935825	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv897912	chr11:73436008-73477045	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs868668	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73413400-73470800	Weak transcription	Esophagus	oesophagus
2	chr11:73415000-73470200	Weak transcription	Aorta	Aorta
3	chr11:73417200-73469600	Weak transcription	Fetal Kidney	kidney
4	chr11:73418400-73463200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:73428400-73469800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:73430600-73462800	Weak transcription	HMEC	breast
7	chr11:73430600-73468800	Weak transcription	NHLF	lung
8	chr11:73430800-73470600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:73432000-73465200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:73432000-73465200	Weak transcription	NHEK	skin
11	chr11:73437000-73469400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:73437600-73468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:73441200-73462800	Weak transcription	Fetal Thymus	thymus
14	chr11:73441200-73464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:73441200-73468600	Weak transcription	Dnd41	blood
16	chr11:73441200-73470000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:73441800-73462600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:73442200-73469600	Weak transcription	HSMM	muscle
19	chr11:73442400-73469800	Weak transcription	Primary B cells from cord blood	blood
20	chr11:73446400-73468400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:73446400-73468600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:73446600-73468800	Weak transcription	NHDF-Ad	bronchial
23	chr11:73446800-73462600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:73446800-73468400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:73447000-73462600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:73447000-73463800	Weak transcription	NH-A	brain
27	chr11:73447800-73463200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:73448200-73462400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:73448200-73468600	Weak transcription	GM12878-XiMat	blood
30	chr11:73448800-73462400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:73448800-73462600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:73448800-73462600	Weak transcription	Primary T cells from cord blood	blood
33	chr11:73448800-73462800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:73448800-73468800	Weak transcription	Fetal Brain Female	brain
35	chr11:73449000-73464800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:73449400-73468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:73449600-73469600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:73450000-73463200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:73450000-73463200	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:73451400-73468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:73451600-73468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:73454800-73462800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:73454800-73462800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:73454800-73465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:73455200-73465000	Weak transcription	Stomach Mucosa	stomach
46	chr11:73456400-73469000	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:73457000-73467600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:73457600-73462600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:73458200-73462800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:73458200-73463200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links