Variant report

Variant	rs868702
Chromosome Location	chr3:143085345-143085346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12489162	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604378	0.81[CHB][hapmap]
rs4839630	0.81[CHB][hapmap]
rs6777284	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628692	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs868703	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877565	chr3:143078986-143116883	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143068200-143091800	Weak transcription	Lung	lung
2	chr3:143070200-143088600	Weak transcription	Aorta	Aorta
3	chr3:143071600-143102400	Weak transcription	Esophagus	oesophagus
4	chr3:143072000-143099400	Weak transcription	Ovary	ovary
5	chr3:143073400-143089600	Weak transcription	Psoas Muscle	Psoas
6	chr3:143077400-143104800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:143082200-143086400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:143082400-143102200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143083000-143096600	Weak transcription	Primary T cells from cord blood	blood
10	chr3:143083200-143096000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:143083400-143085600	Weak transcription	Fetal Thymus	thymus
12	chr3:143083400-143087200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:143083400-143098000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:143083800-143085600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:143084400-143086600	Enhancers	K562	blood
16	chr3:143084600-143087200	Weak transcription	Dnd41	blood
17	chr3:143085000-143086000	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links