Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83584751..83586283-chr15:83589059..83590838,2	MCF-7	breast:
2	chr15:83546863..83549693-chr15:83583628..83585437,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17158155	0.91[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap]
rs17158157	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3784374	0.87[TSI][hapmap]
rs4779069	0.82[YRI][hapmap]
rs4842993	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs869498	C15orf26	cis	cerebellum	SCAN
rs869498	FAM154B	cis	cerebellum	SCAN
rs869498	C15orf40	cis	multi-tissue	Pritchard
rs869498	LINGO1	cis	parietal	SCAN
rs869498	HDGFRP3	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83570400-83591600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83581600-83587200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr15:83582600-83592600	Enhancers	Liver	Liver
4	chr15:83583000-83587200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:83583200-83597200	Enhancers	Pancreas	Pancrea
6	chr15:83584400-83586200	Weak transcription	Ovary	ovary
7	chr15:83584800-83586600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:83585000-83587400	Enhancers	Gastric	stomach
9	chr15:83585000-83587600	Enhancers	Fetal Muscle Leg	muscle
10	chr15:83585000-83587800	Enhancers	Psoas Muscle	Psoas
11	chr15:83585200-83585600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:83585200-83587200	Enhancers	HepG2	liver
13	chr15:83585200-83587600	Enhancers	Spleen	Spleen
14	chr15:83585200-83587800	Enhancers	Left Ventricle	heart
15	chr15:83585400-83585600	Enhancers	Brain Angular Gyrus	brain
16	chr15:83585400-83585600	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:83585400-83585600	Enhancers	Brain Hippocampus Middle	brain
18	chr15:83585400-83585800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:83585400-83586200	Weak transcription	Right Atrium	heart
20	chr15:83585400-83587600	Enhancers	Fetal Muscle Trunk	muscle

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