Variant report

Variant	rs869590
Chromosome Location	chr6:145042314-145042315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1406047	0.81[YRI][hapmap]
rs4398764	1.00[MEX][hapmap]
rs6907407	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762384	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
3	chr6:145009000-145047000	Weak transcription	Esophagus	oesophagus
4	chr6:145010600-145047000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:145011000-145052600	Weak transcription	Ovary	ovary
6	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
7	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
9	chr6:145012000-145047000	Weak transcription	Gastric	stomach
10	chr6:145012000-145055600	Weak transcription	Spleen	Spleen
11	chr6:145012400-145053000	Weak transcription	Fetal Stomach	stomach
12	chr6:145014200-145047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:145018200-145047200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:145018200-145052400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:145019000-145047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:145019400-145052600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:145022000-145051400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:145022200-145053000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
21	chr6:145024200-145047000	Weak transcription	Fetal Thymus	thymus
22	chr6:145024600-145051400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:145025000-145047200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:145025000-145050200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:145027400-145052400	Weak transcription	Liver	Liver
26	chr6:145030000-145047000	Weak transcription	Lung	lung
27	chr6:145030000-145047000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:145030200-145051000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:145030200-145052400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:145030200-145052600	Weak transcription	Aorta	Aorta
31	chr6:145030200-145052600	Weak transcription	Fetal Intestine Large	intestine
32	chr6:145031600-145050600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:145032400-145047000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:145033800-145046600	Weak transcription	Fetal Heart	heart
35	chr6:145034200-145043600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:145035800-145052600	Weak transcription	Fetal Lung	lung
37	chr6:145036800-145046800	Weak transcription	Fetal Kidney	kidney
38	chr6:145036800-145047000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:145037200-145052400	Weak transcription	HUVEC	blood vessel
40	chr6:145037400-145046400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:145038600-145052200	Weak transcription	Adipose Nuclei	Adipose
42	chr6:145038600-145062200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:145039000-145042600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:145039000-145043800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:145039600-145052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:145039800-145052400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:145040000-145043000	Weak transcription	Osteobl	bone
48	chr6:145040000-145051400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:145040000-145052400	Weak transcription	NHDF-Ad	bronchial
50	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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