Variant report

Variant	rs869657
Chromosome Location	chr17:66459524-66459525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:66287633..66289379-chr17:66457483..66460091,3	K562	blood:
2	chr17:66428072..66429724-chr17:66457581..66460246,2	MCF-7	breast:
3	chr17:66259260..66259801-chr17:66459323..66459924,2	K562	blood:
4	chr17:66200949..66201537-chr17:66458835..66459814,2	K562	blood:
5	chr17:66432020..66433251-chr17:66458660..66459719,6	MCF-7	breast:
6	chr17:66459308..66461889-chr17:66462514..66465217,2	K562	blood:
7	chr17:66457871..66459723-chr17:66755442..66757675,2	MCF-7	breast:
8	chr17:66202336..66203155-chr17:66458845..66459815,2	K562	blood:
9	chr17:66458968..66465648-chr17:66506510..66510180,10	MCF-7	breast:
10	chr17:66458992..66460952-chr17:66470688..66473456,3	MCF-7	breast:
11	chr17:66241114..66243541-chr17:66457645..66460570,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000141337	Chromatin interaction
ENSG00000070540	Chromatin interaction
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1030098	1.00[CHB][hapmap]
rs11656906	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs12453629	1.00[CHB][hapmap]
rs1808333	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2287301	1.00[CHB][hapmap]
rs2302782	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2909212	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2909214	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2952291	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6501512	1.00[CHB][hapmap]
rs71378929	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8066131	1.00[CHB][hapmap]
rs918167	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66453600-66462000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:66454600-66464000	Weak transcription	Aorta	Aorta
3	chr17:66454600-66465200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:66454600-66470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:66454800-66462000	Weak transcription	Small Intestine	intestine
6	chr17:66454800-66462200	Weak transcription	Placenta	Placenta
7	chr17:66454800-66463600	Weak transcription	Right Atrium	heart
8	chr17:66455000-66459600	Enhancers	K562	blood
9	chr17:66456400-66459600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr17:66456400-66459800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:66456800-66470400	Weak transcription	Right Ventricle	heart
12	chr17:66457800-66460400	Enhancers	Fetal Muscle Leg	muscle
13	chr17:66457800-66462000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr17:66458000-66462000	Weak transcription	Left Ventricle	heart
15	chr17:66458800-66460000	Enhancers	A549	lung
16	chr17:66459000-66461000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr17:66459200-66459800	Enhancers	HepG2	liver
18	chr17:66459200-66460000	Enhancers	Fetal Heart	heart
19	chr17:66459200-66461400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:66459200-66461400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr17:66459200-66461600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:66459200-66461800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr17:66459200-66461800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr17:66459200-66461800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr17:66459200-66462000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr17:66459200-66462000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:66459200-66462000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr17:66459200-66462000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr17:66459200-66462000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr17:66459200-66462000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:66459200-66462000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr17:66459200-66462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr17:66459200-66462000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr17:66459200-66462000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:66459200-66462000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr17:66459200-66462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr17:66459200-66462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr17:66459200-66462000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr17:66459200-66462000	Weak transcription	Adipose Nuclei	Adipose
40	chr17:66459200-66462000	Weak transcription	Brain Anterior Caudate	brain
41	chr17:66459200-66462000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:66459200-66462000	Weak transcription	Brain Hippocampus Middle	brain
43	chr17:66459200-66462000	Weak transcription	Esophagus	oesophagus
44	chr17:66459200-66462000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr17:66459200-66462000	Weak transcription	Hela-S3	cervix
46	chr17:66459200-66462000	Weak transcription	HMEC	breast
47	chr17:66459200-66462000	Weak transcription	NHDF-Ad	bronchial
48	chr17:66459200-66462000	Weak transcription	NHLF	lung
49	chr17:66459200-66462200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr17:66459200-66463000	Weak transcription	HSMMtube	muscle

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