Variant report

Variant	rs870004
Chromosome Location	chr13:95918063-95918064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95912252..95914596-chr13:95915357..95918104,2	K562	blood:
2	chr13:95911255..95914596-chr13:95915357..95918944,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10508019	0.84[MEX][hapmap]
rs35964200	1.00[ASN][1000 genomes]
rs4148426	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs7984157	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9590217	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv562769	chr13:95910726-95918063	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs870004	ABCC4	cis	lymphoblastoid	seeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
2	chr13:95887000-95918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:95896200-95923400	Weak transcription	Ovary	ovary
4	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:95898800-95919600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:95899000-95919600	Weak transcription	Fetal Lung	lung
7	chr13:95899800-95919600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:95900000-95918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:95900000-95918800	Weak transcription	Lung	lung
10	chr13:95900000-95919000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr13:95900000-95920000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:95908000-95926600	Weak transcription	Gastric	stomach
13	chr13:95908800-95919400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:95908800-95919400	Weak transcription	NH-A	brain
15	chr13:95908800-95919600	Weak transcription	Colon Smooth Muscle	Colon
16	chr13:95908800-95919600	Weak transcription	HSMMtube	muscle
17	chr13:95908800-95920000	Weak transcription	Pancreas	Pancrea
18	chr13:95909000-95919400	Weak transcription	HSMM	muscle
19	chr13:95909200-95918200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:95909200-95919600	Weak transcription	NHEK	skin
21	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:95910400-95918600	Weak transcription	NHDF-Ad	bronchial
23	chr13:95913600-95920000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr13:95914600-95918200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:95914600-95918200	Weak transcription	Fetal Intestine Large	intestine
27	chr13:95915400-95918600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr13:95915600-95918400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr13:95915800-95918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:95916400-95922000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr13:95916800-95918600	Weak transcription	K562	blood
32	chr13:95917000-95918200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr13:95917200-95919600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr13:95917600-95918600	Strong transcription	NHLF	lung
36	chr13:95917600-95919800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr13:95917600-95919800	Weak transcription	Fetal Kidney	kidney
38	chr13:95917800-95918200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:95917800-95918200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:95917800-95918600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr13:95917800-95918600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:95917800-95918600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:95917800-95918600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr13:95917800-95918600	Strong transcription	Stomach Smooth Muscle	stomach
45	chr13:95917800-95918800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr13:95917800-95919000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr13:95917800-95919000	ZNF genes & repeats	A549	lung
48	chr13:95917800-95919800	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr13:95917800-95920400	ZNF genes & repeats	GM12878-XiMat	blood
50	chr13:95918000-95918200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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