Variant report

Variant	rs870095
Chromosome Location	chr4:8542615-8542616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8538338..8543611-chr4:8548493..8553766,7	MCF-7	breast:
2	chr4:8534354..8538693-chr4:8538746..8544060,9	MCF-7	breast:
3	chr4:8542053..8545358-chr4:8547295..8551816,4	MCF-7	breast:
4	chr4:8542415..8545187-chr4:8582095..8584312,2	MCF-7	breast:
5	chr4:8541623..8544258-chr4:8557872..8560632,2	K562	blood:

Variant related genes	Relation type
ENSG00000155269	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10938721	0.81[AMR][1000 genomes]
rs1106707	1.00[ASN][1000 genomes]
rs11723504	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11727986	0.87[AMR][1000 genomes]
rs11732364	0.81[AMR][1000 genomes]
rs12499116	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13116362	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13151782	0.92[ASN][1000 genomes]
rs17204393	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3115410	0.95[ASN][1000 genomes]
rs34257763	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35097287	0.86[AMR][1000 genomes]
rs35822470	0.88[AMR][1000 genomes]
rs36092221	0.86[AMR][1000 genomes]
rs4449400	0.89[AMR][1000 genomes]
rs4996699	0.82[EUR][1000 genomes]
rs55723892	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56379295	0.87[ASN][1000 genomes]
rs61570587	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62287449	0.88[AMR][1000 genomes]
rs6447879	1.00[ASN][1000 genomes]
rs6813080	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73227136	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7377238	0.99[ASN][1000 genomes]
rs7670005	1.00[ASN][1000 genomes]
rs868591	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs870096	1.00[ASN][1000 genomes]
rs870097	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461221	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv593640	chr4:8534283-8554894	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv878612	chr4:8534283-8618916	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv980117	chr4:8535043-8545141	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1832730	chr4:8541086-9514568	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
9	esv1843578	chr4:8541086-9514568	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8532600-8542800	Enhancers	Placenta	Placenta
2	chr4:8533200-8542800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:8539400-8546400	Weak transcription	HSMMtube	muscle
4	chr4:8539600-8546400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:8541200-8546000	Weak transcription	HSMM	muscle
6	chr4:8541400-8544600	Weak transcription	Esophagus	oesophagus
7	chr4:8541600-8549000	Weak transcription	HMEC	breast
8	chr4:8541800-8543000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:8541800-8545800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:8542200-8544000	Weak transcription	NHDF-Ad	bronchial
11	chr4:8542200-8546200	Weak transcription	Osteobl	bone
12	chr4:8542200-8546400	Weak transcription	NHLF	lung
13	chr4:8542200-8548800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:8542400-8544200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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