Variant report

Variant	rs870305
Chromosome Location	chr1:228093064-228093065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:228085970..228089284-chr1:228089997..228094183,4	MCF-7	breast:
2	chr1:228087488..228090532-chr1:228091785..228093572,3	K562	blood:
3	chr1:228084098..228086310-chr1:228092160..228094076,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10799454	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10799456	0.89[EUR][1000 genomes]
rs10799457	0.89[EUR][1000 genomes]
rs10799458	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10916235	0.85[EUR][1000 genomes]
rs11484724	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12074411	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12078365	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1573058	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1573059	0.85[EUR][1000 genomes]
rs28376917	0.85[EUR][1000 genomes]
rs28445597	0.85[EUR][1000 genomes]
rs4653525	0.89[EUR][1000 genomes]
rs4653526	0.89[EUR][1000 genomes]
rs4653878	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4653880	0.85[EUR][1000 genomes]
rs4653882	0.85[EUR][1000 genomes]
rs4653883	0.88[EUR][1000 genomes]
rs4653885	0.89[EUR][1000 genomes]
rs4653886	0.89[EUR][1000 genomes]
rs6657894	0.86[EUR][1000 genomes]
rs67645046	0.85[EUR][1000 genomes]
rs72752172	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72752178	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72752179	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72752184	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752190	0.89[EUR][1000 genomes]
rs7528139	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010605	chr1:227770415-228332690	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv32853	chr1:227880116-228806209	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	nsv427952	chr1:227881664-228308629	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv826908	chr1:227895386-228691100	Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
5	nsv873249	chr1:227920061-228121548	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1005852	chr1:227957099-228148363	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
7	nsv535319	chr1:227957099-228148363	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
8	nsv516409	chr1:228035131-228296745	Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv523935	chr1:228038124-228681749	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
10	nsv873250	chr1:228051234-228121548	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv873251	chr1:228051234-228160911	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
12	esv2762172	chr1:228086834-228101255	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228074000-228096200	Weak transcription	Gastric	stomach
2	chr1:228075600-228109200	Weak transcription	Right Atrium	heart
3	chr1:228076000-228094600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:228080600-228094600	Weak transcription	Esophagus	oesophagus
5	chr1:228081000-228098200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:228089800-228094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:228090200-228094000	Enhancers	Fetal Muscle Leg	muscle
8	chr1:228090600-228094000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr1:228090600-228094800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:228090600-228098200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:228090800-228093800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:228090800-228094800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:228090800-228097600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:228091000-228093400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:228091000-228094800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:228091200-228093400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:228091400-228093800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:228091800-228096200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:228091800-228098200	Weak transcription	Brain Substantia Nigra	brain
20	chr1:228092200-228094400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:228092400-228095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:228092800-228094000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:228093000-228093200	Enhancers	K562	blood

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