Variant report

Variant	rs872329
Chromosome Location	chr3:140872577-140872578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1010717	0.80[AMR][1000 genomes]
rs1108693	0.83[AFR][1000 genomes]
rs12631017	1.00[LWK][hapmap]
rs13080353	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13092946	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9860331	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140864600-140873200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:140866800-140876600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:140867400-140873000	Enhancers	Fetal Heart	heart
5	chr3:140869600-140873400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:140870200-140876000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:140870800-140872600	Enhancers	Fetal Muscle Leg	muscle
8	chr3:140870800-140873000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:140871000-140873000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:140872200-140872800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:140872200-140873000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:140872400-140876600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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