Variant report

Variant	rs872926
Chromosome Location	chr15:78351044-78351045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr15:78350999-78351152	K562	blood:	n/a	n/a
2	MXI1	chr15:78349940-78351085	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:78332545..78335150-chr15:78348925..78351809,2	MCF-7	breast:
2	chr15:78334090..78336952-chr15:78350670..78353482,2	MCF-7	breast:
3	chr15:78347136..78350100-chr15:78350153..78352439,2	K562	blood:
4	chr15:78349057..78351181-chr15:78355340..78357401,2	MCF-7	breast:

Variant related genes	Relation type
TBC1D2B	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10444863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10519181	0.84[CEU][hapmap]
rs12593545	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442293	0.85[CEU][hapmap]
rs16969422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17477813	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1837913	0.84[CEU][hapmap]
rs2044099	0.84[CEU][hapmap]
rs35472584	0.88[CEU][hapmap]
rs4886989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56357772	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs894301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:78343200-78354200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:78344400-78352000	Genic enhancers	Fetal Intestine Small	intestine
6	chr15:78344800-78357600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:78344800-78359800	Weak transcription	Fetal Brain Female	brain
8	chr15:78345000-78352000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:78345000-78354200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:78345200-78351400	Weak transcription	Fetal Kidney	kidney
11	chr15:78345600-78351800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:78346200-78354200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:78346400-78353200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:78346400-78354200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:78346400-78356600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:78346600-78353000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:78346600-78354200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr15:78346800-78354400	Enhancers	Primary B cells from cord blood	blood
19	chr15:78347000-78351200	Enhancers	HSMM	muscle
20	chr15:78347000-78351400	Enhancers	Fetal Muscle Leg	muscle
21	chr15:78347000-78352800	Enhancers	Stomach Mucosa	stomach
22	chr15:78347000-78357400	Enhancers	Fetal Thymus	thymus
23	chr15:78347200-78352200	Enhancers	Small Intestine	intestine
24	chr15:78347400-78351400	Enhancers	HSMMtube	muscle
25	chr15:78347400-78352200	Enhancers	Primary hematopoietic stem cells	blood
26	chr15:78347400-78352400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:78347400-78352400	Enhancers	Fetal Intestine Large	intestine
28	chr15:78347400-78352600	Enhancers	Brain Anterior Caudate	brain
29	chr15:78347400-78354000	Enhancers	NHDF-Ad	bronchial
30	chr15:78347400-78354200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr15:78347400-78354200	Enhancers	Adipose Nuclei	Adipose
32	chr15:78347400-78367800	Enhancers	Placenta	Placenta
33	chr15:78347600-78352200	Enhancers	Colon Smooth Muscle	Colon
34	chr15:78347600-78352600	Enhancers	Brain Cingulate Gyrus	brain
35	chr15:78347600-78352800	Enhancers	Pancreas	Pancrea
36	chr15:78347600-78353000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:78347800-78352000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr15:78348000-78355400	Enhancers	Primary B cells from peripheral blood	blood
39	chr15:78348200-78352400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:78348200-78352600	Enhancers	HUVEC	blood vessel
41	chr15:78348200-78352800	Enhancers	Fetal Muscle Trunk	muscle
42	chr15:78348200-78353000	Enhancers	Dnd41	blood
43	chr15:78348400-78354200	Weak transcription	Fetal Brain Male	brain
44	chr15:78349000-78351200	Enhancers	Thymus	Thymus
45	chr15:78349200-78354200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:78349200-78354200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:78349200-78354200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr15:78349200-78354200	Weak transcription	Aorta	Aorta
49	chr15:78349400-78351200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr15:78349400-78351200	Weak transcription	Brain Inferior Temporal Lobe	brain

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