Variant report

Variant	rs873785
Chromosome Location	chr4:925149-925150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:45)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:45 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:925057-925495	GM12878	blood:	n/a	n/a
2	ELF1	chr4:925113-926837	GM12878	blood:	n/a	n/a
3	MAX	chr4:925053-925358	Hela-S3	cervix:	n/a	chr4:925244-925251
4	RUNX3	chr4:924868-926989	GM12878	blood:	n/a	n/a
5	STAT5A	chr4:924798-925299	GM12878	blood:	n/a	n/a
6	MAX	chr4:925123-925364	K562	blood:	n/a	chr4:925244-925251
7	CEBPB	chr4:924846-925358	IMR90	lung:	n/a	n/a
8	MAZ	chr4:924522-926859	IMR90	lung:	n/a	chr4:925244-925251 chr4:926027-926037
9	BHLHE40	chr4:924962-925453	K562	blood:	n/a	n/a
10	MXI1	chr4:923808-926954	IMR90	lung:	n/a	n/a
11	POLR2A	chr4:924960-925246	Hela-S3	cervix:	n/a	n/a
12	MYC	chr4:925120-925366	K562	blood:	n/a	chr4:925244-925251
13	POLR2A	chr4:924883-925396	Hela-S3	cervix:	n/a	n/a
14	SIN3AK20	chr4:924966-925555	K562	blood:	n/a	n/a
15	CHD2	chr4:925047-925256	Hela-S3	cervix:	n/a	n/a
16	MXI1	chr4:924787-926849	GM12878	blood:	n/a	n/a
17	RUNX3	chr4:924341-925465	GM12878	blood:	n/a	n/a
18	MAX	chr4:924853-926818	K562	blood:	n/a	chr4:925244-925251 chr4:926027-926037
19	TAF1	chr4:924983-925253	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr4:924496-926819	GM12878	blood:	n/a	n/a
21	MYC	chr4:925063-925530	NB4	blood:	n/a	chr4:925244-925251
22	CHD1	chr4:923455-927120	IMR90	lung:	n/a	n/a
23	MAFK	chr4:924763-925202	IMR90	lung:	n/a	n/a
24	POLR2A	chr4:924827-925473	GM12878	blood:	n/a	n/a
25	POLR2A	chr4:925055-926579	Hela-S3	cervix:	n/a	n/a
26	MXI1	chr4:924619-927025	SK-N-SH	brain:	n/a	n/a
27	MXI1	chr4:925108-925278	Hela-S3	cervix:	n/a	n/a
28	MAX	chr4:925064-925341	K562	blood:	n/a	chr4:925244-925251
29	MXI1	chr4:925074-925382	HepG2	liver:	n/a	n/a
30	ELF1	chr4:924910-925188	K562	blood:	n/a	n/a
31	MAZ	chr4:925034-925208	K562	blood:	n/a	n/a
32	BHLHE40	chr4:925017-925398	HepG2	liver:	n/a	n/a
33	SIN3A	chr4:925001-925641	GM12878	blood:	n/a	n/a
34	POLR2A	chr4:924610-926375	K562	blood:	n/a	n/a
35	RELA	chr4:925094-926760	GM15510	blood:	n/a	n/a
36	POLR2A	chr4:925146-925504	GM12878	blood:	n/a	n/a
37	FOS	chr4:924867-925190	MCF10A-Er-Src	breast:	n/a	n/a
38	BHLHE40	chr4:924674-925614	GM12878	blood:	n/a	n/a
39	MTA3	chr4:924460-925384	GM12878	blood:	n/a	n/a
40	POLR2A	chr4:924907-925214	K562	blood:	n/a	n/a
41	MAX	chr4:924804-925555	NB4	blood:	n/a	chr4:925244-925251
42	CHD2	chr4:924989-926415	GM12878	blood:	n/a	n/a
43	WRNIP1	chr4:924578-925657	GM12878	blood:	n/a	n/a
44	USF2	chr4:925105-925367	GM12878	blood:	n/a	n/a
45	POLR2A	chr4:923507-926966	IMR90	lung:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:757903..760151-chr4:923832..926606,2	K562	blood:
2	chr4:905886..907959-chr4:923124..925745,2	K562	blood:
3	chr4:920431..925400-chr4:1002690..1006792,6	K562	blood:
4	chr4:923770..927807-chr4:980855..982632,3	MCF-7	breast:
5	chr4:924781..927382-chr4:966094..969018,4	K562	blood:
6	chr4:923280..928378-chr4:984909..989379,9	K562	blood:
7	chr4:923541..927987-chr4:977936..983574,14	MCF-7	breast:
8	chr4:924186..928081-chr4:943762..948764,6	K562	blood:
9	chr4:923619..928083-chr4:975582..982523,10	K562	blood:
10	chr4:773038..776439-chr4:923639..926176,4	MCF-7	breast:
11	chr4:924721..927065-chr4:955079..957263,2	MCF-7	breast:
12	chr4:774335..777276-chr4:923482..926205,2	K562	blood:
13	chr4:899878..903573-chr4:921540..925410,3	K562	blood:
14	chr4:922716..929032-chr4:963622..968729,9	MCF-7	breast:
15	chr4:924753..925253-chr8:67578655..67579451,2	NB4	blood:
16	chr4:922193..925879-chr4:967045..969349,3	MCF-7	breast:
17	chr4:829544..831715-chr4:924978..927589,2	MCF-7	breast:

No data

Variant related genes	Relation type
TMEM175	TF binding region
ENSG00000127418	Chromatin interaction
ENSG00000145214	Chromatin interaction
ENSG00000233799	Chromatin interaction
ENSG00000127419	Chromatin interaction
ENSG00000145217	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000260262	Chromatin interaction
ENSG00000249592	Chromatin interaction
ENSG00000178950	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10008187	0.91[ASN][1000 genomes]
rs10016294	0.94[ASN][1000 genomes]
rs11724898	0.90[ASN][1000 genomes]
rs11729289	0.84[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2290403	0.84[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs28504033	0.85[ASN][1000 genomes]
rs3775113	0.88[JPT][hapmap]
rs3775120	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3775121	0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap]
rs6813110	0.84[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs6848199	0.89[ASN][1000 genomes]
rs6851795	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7697111	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	esv2757916	chr4:603208-931354	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2759217	chr4:603208-931354	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv878247	chr4:607202-925149	Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
6	esv1829397	chr4:655939-1041957	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv878255	chr4:708932-1052488	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	nsv878258	chr4:712222-1058358	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
9	nsv878260	chr4:713920-1052488	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv878261	chr4:756686-1047794	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
11	nsv1003219	chr4:769894-1105464	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
12	nsv878263	chr4:771587-1047794	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv432547	chr4:782301-1053930	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv878264	chr4:790757-1047794	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv878265	chr4:793929-1024752	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
16	nsv878266	chr4:793929-1058358	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
17	nsv878268	chr4:795890-925149	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
18	nsv878269	chr4:795890-1024752	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
19	nsv878270	chr4:798962-1024752	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	nsv469998	chr4:809593-1087531	Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
21	nsv878272	chr4:809787-1058358	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
22	nsv878275	chr4:813393-925149	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
23	nsv1008352	chr4:813393-1035416	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
24	nsv878276	chr4:813393-1047794	Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
25	nsv878277	chr4:813393-1087531	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
26	nsv1012895	chr4:827866-1054874	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
27	nsv536979	chr4:827866-1054874	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
28	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
29	nsv878280	chr4:828148-1052488	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
30	nsv878281	chr4:830601-925149	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
31	esv3414154	chr4:837025-978620	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
32	nsv998496	chr4:837273-964391	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
33	nsv1010196	chr4:851357-942660	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
34	esv29984	chr4:851357-964359	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
35	nsv878282	chr4:854712-925149	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
36	nsv878283	chr4:862156-1052488	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
37	nsv878284	chr4:867866-925149	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
38	nsv1009970	chr4:876397-968985	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	nsv536981	chr4:876397-968985	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
40	nsv878285	chr4:891098-1052488	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
41	nsv1009619	chr4:901897-1215657	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
42	nsv1012906	chr4:912338-974719	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
43	nsv536982	chr4:912338-974719	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs873785	CRIPAK	cis	parietal	SCAN
rs873785	MFSD10	cis	cerebellum	SCAN
rs873785	TMEM175	cis	cerebellum	SCAN
rs873785	SLC26A1	cis	Skin Sun Exposed Lower leg	GTEx
rs873785	SLBP	cis	cerebellum	SCAN
rs873785	SLC26A1	cis	Artery Tibial	GTEx
rs873785	KIAA1530	cis	parietal	SCAN
rs873785	DGKQ	Cis_1M	lymphoblastoid	RTeQTL
rs873785	KIAA1530	cis	cerebellum	SCAN
rs873785	CRIPAK	cis	cerebellum	SCAN
rs873785	DGKQ	cis	lung	GTEx
rs873785	DGKQ	cis	multi-tissue	Pritchard
rs873785	CRIPAK	Cis_1M	lymphoblastoid	RTeQTL
rs873785	DGKQ	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:910800-925200	Weak transcription	Aorta	Aorta
2	chr4:923200-925600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr4:923400-925200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr4:923800-925200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:923800-925200	Flanking Active TSS	Osteobl	bone
6	chr4:923800-925400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:923800-925400	Flanking Active TSS	Dnd41	blood
8	chr4:924000-925200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:924000-925200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:924000-925200	Flanking Active TSS	Hela-S3	cervix
11	chr4:924000-925400	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr4:924000-925400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:924000-925600	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr4:924000-925600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr4:924000-926800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:924200-925200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr4:924200-925200	Enhancers	Small Intestine	intestine
18	chr4:924200-925400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr4:924200-925400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:924200-925600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:924200-925800	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr4:924400-925200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:924400-925200	Flanking Active TSS	K562	blood
24	chr4:924400-925200	Flanking Active TSS	NHEK	skin
25	chr4:924400-925400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:924400-925400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr4:924400-925400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:924400-925400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr4:924400-925400	Flanking Active TSS	Liver	Liver
30	chr4:924400-925400	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr4:924400-925400	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr4:924400-925400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr4:924400-925400	Flanking Active TSS	HUVEC	blood vessel
34	chr4:924400-925600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:924400-925800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr4:924400-927000	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr4:924600-925200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr4:924600-925200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr4:924600-925200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:924600-925200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:924600-925200	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr4:924600-925400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr4:924600-925400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr4:924600-925400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr4:924600-925400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr4:924600-925400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr4:924600-925400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr4:924600-925400	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr4:924600-925400	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr4:924600-925400	Flanking Active TSS	Brain Cingulate Gyrus	brain

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