Variant report

Variant	rs874774
Chromosome Location	chr4:141833350-141833351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10004141	0.93[YRI][hapmap]
rs10004146	0.89[YRI][hapmap]
rs10009037	0.93[YRI][hapmap]
rs10009916	0.90[YRI][hapmap]
rs10023796	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1108084	0.81[CHB][hapmap]
rs11732171	0.93[YRI][hapmap]
rs11735133	0.93[YRI][hapmap]
rs11735986	0.90[YRI][hapmap]
rs12503723	0.93[YRI][hapmap]
rs12642167	0.93[YRI][hapmap]
rs13111614	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs13111885	0.89[YRI][hapmap]
rs13118519	0.89[YRI][hapmap]
rs13135760	0.89[YRI][hapmap]
rs13138724	0.93[YRI][hapmap]
rs13144869	0.90[YRI][hapmap]
rs1425441	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs1425446	0.87[CHB][hapmap]
rs1425447	0.93[YRI][hapmap]
rs6537018	0.93[YRI][hapmap]
rs6537019	0.93[YRI][hapmap]
rs6537020	0.93[YRI][hapmap]
rs6537021	0.93[YRI][hapmap]
rs6827543	0.81[AFR][1000 genomes]
rs6829247	0.90[YRI][hapmap]
rs6848867	0.81[AFR][1000 genomes]
rs7662414	0.93[YRI][hapmap]
rs7678079	0.92[YRI][hapmap]
rs874775	0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs874776	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141816200-141851400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:141823200-141855800	Weak transcription	Osteobl	bone
3	chr4:141825800-141847200	Weak transcription	Fetal Kidney	kidney
4	chr4:141826000-141834000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:141826600-141835000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:141826600-141836600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:141826800-141833800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:141828200-141833600	Weak transcription	Spleen	Spleen
9	chr4:141828400-141833400	Weak transcription	Esophagus	oesophagus
10	chr4:141828400-141834400	Weak transcription	Right Atrium	heart
11	chr4:141828800-141833600	Weak transcription	Psoas Muscle	Psoas
12	chr4:141829000-141834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:141829600-141845600	Weak transcription	Fetal Heart	heart
14	chr4:141830200-141847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:141830600-141834200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:141830600-141834400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:141832200-141833600	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:141832200-141834000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:141832200-141845800	Weak transcription	Ovary	ovary
20	chr4:141832200-141846200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:141832200-141855200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:141832400-141833400	Weak transcription	Aorta	Aorta
23	chr4:141832400-141833600	Weak transcription	Left Ventricle	heart
24	chr4:141832400-141834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:141832400-141834600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:141832400-141836000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:141832400-141846000	Weak transcription	Adipose Nuclei	Adipose
28	chr4:141832400-141846400	Weak transcription	Right Ventricle	heart
29	chr4:141832600-141833800	Weak transcription	Fetal Stomach	stomach
30	chr4:141832600-141834200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:141832600-141834800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:141832600-141836000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:141832600-141836200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:141832600-141836200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:141832600-141836400	Weak transcription	Fetal Brain Female	brain
36	chr4:141832600-141836600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:141832600-141836600	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:141832600-141846200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:141832600-141847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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