Variant report

Variant	rs875070
Chromosome Location	chr20:16242568-16242569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73898449	0.82[EUR][1000 genomes]
rs73898450	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv519621	chr20:16236837-16248453	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv516591	chr20:16238023-16248453	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3343292	chr20:16238552-16242750	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16240200-16242800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:16240400-16243400	Weak transcription	Spleen	Spleen
3	chr20:16240600-16246200	Weak transcription	Gastric	stomach
4	chr20:16241400-16242800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr20:16241400-16243800	Enhancers	K562	blood
6	chr20:16242000-16242800	Enhancers	Lung	lung
7	chr20:16242000-16244800	Enhancers	Ovary	ovary
8	chr20:16242200-16243600	Weak transcription	Left Ventricle	heart
9	chr20:16242200-16243800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:16242400-16244400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr20:16242400-16275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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