Variant report

Variant	rs875185
Chromosome Location	chr12:83483162-83483163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12827415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010168	1.00[CEU][hapmap]
rs71450922	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv469490	chr12:83089431-83507269	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv559542	chr12:83089431-83507269	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83468200-83486000	Weak transcription	Gastric	stomach
2	chr12:83468600-83502600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:83468800-83484400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:83469000-83507600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:83476800-83507200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:83477000-83491600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:83477200-83495800	Weak transcription	Fetal Heart	heart
8	chr12:83477600-83485400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:83477600-83485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:83477800-83484400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr12:83478000-83486000	Weak transcription	Fetal Brain Male	brain
12	chr12:83480000-83483400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:83481800-83492000	Weak transcription	Fetal Lung	lung
14	chr12:83482600-83483200	Strong transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links