Variant report

Variant	rs875208
Chromosome Location	chr5:167150560-167150561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:167150041..167150634-chr5:167447492..167448418,3	MCF-7	breast:
2	chr5:167149972..167151031-chr5:167474022..167475010,7	MCF-7	breast:
3	chr5:167150201..167150713-chr5:167646626..167647567,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10057249	0.84[EUR][1000 genomes]
rs1459072	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2244456	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs279403	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs279404	0.84[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs279413	0.82[CEU][hapmap]
rs279416	0.84[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167143400-167152800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167143400-167156000	Weak transcription	NH-A	brain
3	chr5:167145400-167152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167146800-167150800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:167148000-167152400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:167148000-167152400	Weak transcription	Fetal Lung	lung
7	chr5:167148000-167152800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:167148200-167152400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:167148400-167150800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167148600-167150600	Weak transcription	Brain Anterior Caudate	brain
11	chr5:167148600-167157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:167148800-167152400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:167148800-167156800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:167149000-167150800	Enhancers	NHEK	skin
15	chr5:167149000-167151000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:167149200-167150800	Enhancers	HMEC	breast
17	chr5:167149200-167156000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:167149200-167156400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:167149600-167150800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr5:167149800-167150800	Enhancers	NHDF-Ad	bronchial
21	chr5:167150000-167150800	Enhancers	HSMM	muscle
22	chr5:167150200-167150600	Enhancers	Adipose Nuclei	Adipose
23	chr5:167150200-167150800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:167150200-167150800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:167150200-167150800	Enhancers	Left Ventricle	heart
26	chr5:167150200-167150800	Enhancers	Right Ventricle	heart
27	chr5:167150200-167150800	Enhancers	Dnd41	blood
28	chr5:167150200-167150800	Enhancers	Hela-S3	cervix
29	chr5:167150200-167150800	Enhancers	Osteobl	bone
30	chr5:167150200-167151000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:167150400-167150800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr5:167150400-167150800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:167150400-167151600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:167150400-167151800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:167150400-167155000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:167150400-167156800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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