Variant report

Variant	rs876013
Chromosome Location	chr3:137802847-137802848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16847839	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16847860	1.00[AMR][1000 genomes]
rs16847862	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6439786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768849	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786304	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7621678	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757890	chr3:137611789-137933835	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2759180	chr3:137611789-137933835	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2751978	chr3:137715302-137890750	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1007857	chr3:137767454-137843106	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1002136	chr3:137776151-137806500	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137780000-137813400	Weak transcription	HUVEC	blood vessel
2	chr3:137780600-137811600	Weak transcription	Psoas Muscle	Psoas
3	chr3:137781000-137833200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:137783200-137811600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:137783200-137821200	Weak transcription	Colonic Mucosa	Colon
6	chr3:137785400-137805600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:137787600-137806600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:137787800-137805200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:137789800-137803200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:137789800-137803600	Strong transcription	Fetal Lung	lung
11	chr3:137792000-137820600	Weak transcription	Esophagus	oesophagus
12	chr3:137792200-137805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:137792400-137818200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:137793800-137803600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr3:137794600-137803400	Strong transcription	Fetal Muscle Leg	muscle
16	chr3:137794600-137803400	Strong transcription	Fetal Stomach	stomach
17	chr3:137795800-137803400	Strong transcription	Aorta	Aorta
18	chr3:137796200-137803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:137796200-137811400	Weak transcription	Fetal Brain Male	brain
20	chr3:137796600-137803800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:137796800-137805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:137798400-137803200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:137798600-137803400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:137798800-137803200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:137798800-137803800	Strong transcription	Right Ventricle	heart
26	chr3:137799400-137803800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:137800000-137803400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:137801000-137803000	Enhancers	Primary T cells from cord blood	blood
29	chr3:137801000-137803000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr3:137801200-137803000	Strong transcription	Fetal Heart	heart
31	chr3:137801200-137803000	Weak transcription	Placenta	Placenta
32	chr3:137801200-137803000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:137801400-137803400	Strong transcription	Left Ventricle	heart
34	chr3:137801400-137805400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:137801600-137803600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:137801600-137803600	Strong transcription	Fetal Kidney	kidney
37	chr3:137801600-137820600	Weak transcription	Spleen	Spleen
38	chr3:137801600-137833200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:137801800-137803200	Enhancers	GM12878-XiMat	blood
40	chr3:137801800-137803400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:137801800-137805200	Weak transcription	Brain Anterior Caudate	brain
42	chr3:137801800-137807800	Weak transcription	NHEK	skin
43	chr3:137801800-137812600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:137801800-137815200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:137802000-137803000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:137802000-137803200	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr3:137802000-137803200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:137802000-137803200	Strong transcription	Adipose Nuclei	Adipose
49	chr3:137802000-137803200	Strong transcription	Brain Substantia Nigra	brain
50	chr3:137802000-137803200	Strong transcription	Fetal Brain Female	brain

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