Variant report

Variant	rs876088
Chromosome Location	chr7:150652419-150652420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150651843..150653881-chr7:150784068..150785698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11763311	0.84[EUR][1000 genomes]
rs6948860	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73167622	1.00[EUR][1000 genomes]
rs73470539	0.81[EUR][1000 genomes]
rs758888	0.81[EUR][1000 genomes]
rs7803184	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
8	nsv465212	chr7:150598492-150667210	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv609000	chr7:150598492-150667210	Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv465213	chr7:150606288-150667210	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv609001	chr7:150606288-150667210	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
13	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
14	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
15	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
16	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
17	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
18	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
19	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
20	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
21	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv970969	chr7:150645769-150655995	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150646800-150653200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:150649600-150653200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr7:150649800-150652800	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr7:150649800-150654800	Enhancers	Left Ventricle	heart
5	chr7:150650000-150652600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:150650000-150652800	Flanking Active TSS	Rectal Smooth Muscle	rectum
7	chr7:150650400-150654600	Enhancers	Right Ventricle	heart
8	chr7:150650800-150653400	Enhancers	Pancreas	Pancrea
9	chr7:150651000-150652600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr7:150651000-150652600	Enhancers	Right Atrium	heart
11	chr7:150651000-150652800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr7:150651000-150654000	Enhancers	Fetal Lung	lung
13	chr7:150651000-150654200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:150651200-150653600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:150651400-150653000	Enhancers	Esophagus	oesophagus
16	chr7:150651400-150653400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:150651400-150653400	Enhancers	Brain Anterior Caudate	brain
18	chr7:150651600-150652800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr7:150651600-150653000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:150651600-150653800	Bivalent Enhancer	Placenta	Placenta
21	chr7:150651600-150654000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:150651600-150654000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:150651600-150654000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:150651800-150652600	Flanking Active TSS	Fetal Heart	heart
25	chr7:150651800-150652600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
26	chr7:150651800-150652800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr7:150651800-150653200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:150651800-150653200	Enhancers	Spleen	Spleen
29	chr7:150651800-150653400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:150651800-150653400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:150651800-150653400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr7:150651800-150653600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr7:150651800-150654000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr7:150652000-150652600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:150652000-150652600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:150652000-150652800	Enhancers	Brain Substantia Nigra	brain
37	chr7:150652000-150652800	Active TSS	Duodenum Mucosa	Duodenum
38	chr7:150652000-150652800	Enhancers	Gastric	stomach
39	chr7:150652000-150652800	Bivalent Enhancer	Stomach Mucosa	stomach
40	chr7:150652000-150653000	Enhancers	Primary hematopoietic stem cells	blood
41	chr7:150652000-150653000	Enhancers	Fetal Brain Male	brain
42	chr7:150652000-150653000	Enhancers	Fetal Brain Female	brain
43	chr7:150652000-150653200	Enhancers	Brain Cingulate Gyrus	brain
44	chr7:150652000-150653200	Flanking Active TSS	Ovary	ovary
45	chr7:150652000-150653200	Active TSS	K562	blood
46	chr7:150652000-150653400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr7:150652000-150653400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr7:150652000-150653600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:150652200-150652600	Bivalent/Poised TSS	Colonic Mucosa	Colon
50	chr7:150652200-150652600	Enhancers	Skeletal Muscle Female	skeletal muscle

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