Variant report

Variant	rs876204
Chromosome Location	chr2:134325554-134325555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10803537	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11675147	0.91[CHB][hapmap]
rs12622133	1.00[EUR][1000 genomes]
rs13412991	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs16826437	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16826512	1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16826737	1.00[EUR][1000 genomes]
rs1897433	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs1897434	0.80[ASN][1000 genomes]
rs60546774	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6705688	0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs6706405	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv516644	chr2:134301130-134391214	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv431713	chr2:134316522-134413604	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134320000-134325600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:134322400-134325800	Weak transcription	Esophagus	oesophagus
3	chr2:134322600-134325600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:134323800-134326400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:134324000-134325600	Enhancers	NHEK	skin
6	chr2:134324000-134326400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:134324200-134325600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:134324200-134325600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:134324200-134325600	Enhancers	Fetal Heart	heart
10	chr2:134324200-134326400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:134324200-134326400	Enhancers	HMEC	breast
12	chr2:134324400-134325600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:134324400-134325600	Flanking Active TSS	NHLF	lung
14	chr2:134324400-134325800	Flanking Active TSS	Fetal Stomach	stomach
15	chr2:134324400-134326400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:134324400-134326400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:134324400-134326400	Active TSS	Fetal Brain Female	brain
18	chr2:134324400-134326400	Flanking Active TSS	NH-A	brain
19	chr2:134324400-134326400	Flanking Active TSS	Osteobl	bone
20	chr2:134324400-134327000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:134324400-134327200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:134324400-134329000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr2:134324600-134325600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr2:134324600-134325600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:134324600-134325600	Enhancers	Ovary	ovary
26	chr2:134324600-134325800	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr2:134324600-134325800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr2:134324600-134326400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:134324600-134326400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr2:134324600-134328600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr2:134324600-134329600	Enhancers	H1 Cell Line	embryonic stem cell
32	chr2:134324600-134330400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr2:134324800-134325800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr2:134324800-134326200	Active TSS	Brain Cingulate Gyrus	brain
35	chr2:134324800-134326200	Active TSS	Fetal Intestine Large	intestine
36	chr2:134324800-134326200	Active TSS	Left Ventricle	heart
37	chr2:134324800-134326200	Bivalent Enhancer	HepG2	liver
38	chr2:134324800-134326400	Active TSS	Right Atrium	heart
39	chr2:134324800-134326400	Active TSS	Right Ventricle	heart
40	chr2:134324800-134326600	Active TSS	Brain Anterior Caudate	brain
41	chr2:134325000-134325600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
42	chr2:134325000-134325600	Weak transcription	Adipose Nuclei	Adipose
43	chr2:134325000-134325600	Active TSS	Stomach Smooth Muscle	stomach
44	chr2:134325000-134325800	Active TSS	Liver	Liver
45	chr2:134325000-134326000	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr2:134325000-134326200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:134325000-134326400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:134325000-134326400	Flanking Active TSS	Fetal Lung	lung
49	chr2:134325000-134326400	Active TSS	Fetal Muscle Trunk	muscle
50	chr2:134325000-134330000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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