Variant report

Variant	rs876858
Chromosome Location	chr4:57914919-57914920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12621	0.82[CHB][hapmap]
rs1277308	0.82[CHB][hapmap]
rs1403233	0.82[CHB][hapmap]
rs1718831	0.82[CHB][hapmap]
rs1718837	0.82[CHB][hapmap]
rs6843644	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:57907400-57916600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:57910400-57915000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:57910400-57915000	Weak transcription	Spleen	Spleen
8	chr4:57910400-57917200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:57910400-57921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:57911400-57915200	Weak transcription	Brain Anterior Caudate	brain
11	chr4:57911600-57917200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:57911600-57917400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:57911800-57915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:57911800-57915200	Weak transcription	A549	lung
15	chr4:57911800-57919600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:57912000-57920200	Weak transcription	Aorta	Aorta
17	chr4:57912600-57915000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:57912600-57916600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:57912800-57915000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:57913000-57915600	Weak transcription	Psoas Muscle	Psoas
21	chr4:57913000-57921200	Weak transcription	Fetal Stomach	stomach
22	chr4:57913000-57922000	Weak transcription	NHLF	lung
23	chr4:57913000-57922600	Weak transcription	Ovary	ovary
24	chr4:57913200-57915000	Weak transcription	NH-A	brain
25	chr4:57913400-57915600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:57913400-57915800	Weak transcription	Right Ventricle	heart
27	chr4:57913600-57915000	Weak transcription	Fetal Kidney	kidney
28	chr4:57914000-57919600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:57914200-57915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:57914200-57915800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:57914200-57918000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:57914600-57915000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:57914600-57915600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:57914600-57915600	Weak transcription	Left Ventricle	heart
35	chr4:57914600-57915800	Enhancers	Colon Smooth Muscle	Colon
36	chr4:57914600-57916000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr4:57914600-57916000	Enhancers	HMEC	breast
38	chr4:57914600-57916200	Genic enhancers	Osteobl	bone
39	chr4:57914600-57916600	Enhancers	HSMMtube	muscle
40	chr4:57914600-57918000	Enhancers	HUVEC	blood vessel
41	chr4:57914800-57915000	Enhancers	Right Atrium	heart
42	chr4:57914800-57915200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:57914800-57915200	Enhancers	Brain Hippocampus Middle	brain
44	chr4:57914800-57915400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:57914800-57915400	Enhancers	HSMM	muscle
46	chr4:57914800-57915400	Enhancers	NHDF-Ad	bronchial
47	chr4:57914800-57915800	Enhancers	Fetal Heart	heart
48	chr4:57914800-57916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:57914800-57916200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:57914800-57916200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links