Variant report

Variant	rs877017
Chromosome Location	chr1:76595644-76595645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12079387	1.00[MEX][hapmap]
rs1335739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098132	0.80[YRI][hapmap]
rs17098150	1.00[MEX][hapmap];0.80[YRI][hapmap]
rs2577803	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs2706192	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs58246454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv522056	chr1:76573614-76598209	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv947432	chr1:76591253-76601907	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76581800-76596200	Weak transcription	Fetal Intestine Large	intestine
5	chr1:76587800-76602800	Weak transcription	Right Atrium	heart
6	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
7	chr1:76591200-76607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76591800-76601400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:76592000-76601400	Weak transcription	Brain Anterior Caudate	brain
10	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
11	chr1:76592800-76605800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:76593000-76601200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:76593000-76608200	Weak transcription	Fetal Lung	lung
14	chr1:76593400-76596800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:76593400-76598600	Strong transcription	Fetal Stomach	stomach
16	chr1:76594000-76601200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:76594000-76601600	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:76594200-76601400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:76594200-76601400	Weak transcription	Brain Substantia Nigra	brain
20	chr1:76594200-76607400	Weak transcription	Fetal Brain Female	brain
21	chr1:76594400-76598200	Weak transcription	Aorta	Aorta
22	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:76595200-76596200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:76595200-76597000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:76595400-76596000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr1:76595600-76595800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr1:76595600-76595800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:76595600-76597800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:76595600-76602400	Weak transcription	Stomach Smooth Muscle	stomach

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