Variant report

Variant	rs877266
Chromosome Location	chr14:69779461-69779462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1026385	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1147471	0.83[ASN][1000 genomes]
rs2185493	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2274442	0.91[ASN][1000 genomes]
rs55647841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55735640	0.89[ASN][1000 genomes]
rs55820856	0.93[ASN][1000 genomes]
rs55926514	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56144761	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59831177	0.89[ASN][1000 genomes]
rs74059946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs877266	SLC8A3	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69777600-69783200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69779000-69780000	Enhancers	Brain Cingulate Gyrus	brain
3	chr14:69779000-69780200	Enhancers	Brain Substantia Nigra	brain
4	chr14:69779000-69780400	Enhancers	Brain Angular Gyrus	brain
5	chr14:69779000-69781400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:69779000-69786200	Enhancers	Left Ventricle	heart
7	chr14:69779200-69779800	Enhancers	Right Atrium	heart
8	chr14:69779200-69780000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr14:69779200-69780200	Enhancers	Brain Anterior Caudate	brain
10	chr14:69779200-69780200	Enhancers	Brain Hippocampus Middle	brain
11	chr14:69779200-69780200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:69779200-69780400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:69779400-69779600	Enhancers	Spleen	Spleen
14	chr14:69779400-69780200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr14:69779400-69780400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:69779400-69780800	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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