Variant report

Variant	rs878611
Chromosome Location	chr11:87065948-87065949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10898668	0.94[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898676	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898685	0.90[EUR][1000 genomes]
rs10898687	0.90[EUR][1000 genomes]
rs11235097	0.94[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235101	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235126	0.90[EUR][1000 genomes]
rs12226009	0.90[EUR][1000 genomes]
rs12226742	0.81[ASN][1000 genomes]
rs17213251	0.93[ASN][1000 genomes]
rs3758656	0.86[CHB][hapmap]
rs4373967	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4636701	0.93[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592360	0.90[EUR][1000 genomes]
rs7934070	0.90[EUR][1000 genomes]
rs7944302	0.90[EUR][1000 genomes]
rs7947413	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87061800-87066400	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:87062000-87066200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:87063200-87068400	Enhancers	Fetal Lung	lung
5	chr11:87063600-87067200	Enhancers	Adipose Nuclei	Adipose
6	chr11:87063800-87068600	Enhancers	Fetal Muscle Leg	muscle
7	chr11:87064000-87066400	Enhancers	Spleen	Spleen
8	chr11:87064200-87066600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:87064200-87066600	Weak transcription	Fetal Brain Male	brain
10	chr11:87064200-87079800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:87064400-87066000	Weak transcription	Ovary	ovary
12	chr11:87064400-87066200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:87064400-87066200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:87064400-87067400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:87064400-87071000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:87064600-87068200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:87064800-87069800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:87065000-87066400	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:87065000-87066600	Weak transcription	NHDF-Ad	bronchial
20	chr11:87065200-87066200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:87065200-87066600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:87065200-87067600	Weak transcription	Colonic Mucosa	Colon
23	chr11:87065600-87066000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:87065600-87066800	Weak transcription	Fetal Stomach	stomach
25	chr11:87065600-87067400	Weak transcription	Left Ventricle	heart
26	chr11:87065600-87077800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:87065800-87066800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:87065800-87066800	Enhancers	Right Atrium	heart

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