Variant report

Variant	rs879206
Chromosome Location	chr4:149335408-149335409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11937655	0.95[EUR][1000 genomes]
rs1490453	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1512335	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs16998733	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17484873	0.81[CEU][hapmap]
rs17582031	0.83[CHB][hapmap]
rs1994624	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2048546	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6834935	0.81[CEU][hapmap]
rs6840422	0.83[CHB][hapmap]
rs7682972	0.98[ASN][1000 genomes]
rs7688969	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7698307	0.81[CEU][hapmap]
rs995567	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
3	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:149325800-149338600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
11	chr4:149327200-149341800	Weak transcription	Right Atrium	heart
12	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
13	chr4:149327800-149346400	Weak transcription	Gastric	stomach
14	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
15	chr4:149328600-149337600	Weak transcription	Stomach Mucosa	stomach
16	chr4:149329600-149343800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:149330400-149336000	Weak transcription	Adipose Nuclei	Adipose
18	chr4:149330600-149339000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:149332200-149336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:149333400-149339400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr4:149333800-149336600	Weak transcription	Brain Anterior Caudate	brain
22	chr4:149334000-149341800	Weak transcription	Left Ventricle	heart
23	chr4:149334600-149337600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr4:149335200-149336800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:149335200-149337800	Enhancers	Liver	Liver
26	chr4:149335400-149339000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:149335400-149346400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr4:149335400-149349200	Weak transcription	Fetal Heart	heart

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