Variant report

Variant	rs879961
Chromosome Location	chr1:209460923-209460924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10494922	0.84[ASN][1000 genomes]
rs10494924	0.91[CHB][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap]
rs11586524	0.89[ASN][1000 genomes]
rs12753447	0.85[ASN][1000 genomes]
rs1395748	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1876409	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246571	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2247066	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254757	0.91[ASN][1000 genomes]
rs2356722	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2456811	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2660634	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2660642	0.81[JPT][hapmap]
rs2800929	0.91[ASN][1000 genomes]
rs2843167	0.87[ASN][1000 genomes]
rs906347	0.85[CHB][hapmap]
rs906350	0.86[CHB][hapmap]
rs906351	0.86[CHB][hapmap]
rs906353	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209459400-209461200	Enhancers	Fetal Lung	lung
2	chr1:209460800-209466000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links