Variant report

Variant	rs880205
Chromosome Location	chr9:116427810-116427811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116423224..116425225-chr9:116427295..116429432,2	MCF-7	breast:
2	chr9:116420136..116422934-chr9:116424938..116428259,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1077072	0.88[EUR][1000 genomes]
rs10817498	1.00[ASN][1000 genomes]
rs10981865	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981866	1.00[ASN][1000 genomes]
rs10981867	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981868	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10981869	1.00[ASN][1000 genomes]
rs10981870	1.00[ASN][1000 genomes]
rs10981871	1.00[ASN][1000 genomes]
rs10981872	1.00[ASN][1000 genomes]
rs10981873	1.00[ASN][1000 genomes]
rs10981874	1.00[ASN][1000 genomes]
rs10981875	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907724	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2101069	1.00[ASN][1000 genomes]
rs2622266	0.82[ASN][1000 genomes]
rs59286569	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59638505	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7031646	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7031648	1.00[ASN][1000 genomes]
rs7031666	1.00[ASN][1000 genomes]
rs7047639	1.00[ASN][1000 genomes]
rs7047776	1.00[ASN][1000 genomes]
rs7048067	0.83[ASN][1000 genomes]
rs745730	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7854061	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv466512	chr9:116413751-116446881	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv615220	chr9:116413751-116446881	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116425200-116429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:116427200-116428400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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