Variant report

Variant	rs880745
Chromosome Location	chr11:119864575-119864576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10790362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892507	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10892511	0.94[ASN][1000 genomes]
rs1944497	0.94[ASN][1000 genomes]
rs1944498	0.94[ASN][1000 genomes]
rs2155168	0.94[ASN][1000 genomes]
rs4482041	0.94[ASN][1000 genomes]
rs4938747	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938749	0.94[ASN][1000 genomes]
rs4938750	0.94[ASN][1000 genomes]
rs4938751	0.94[ASN][1000 genomes]
rs4938752	0.94[ASN][1000 genomes]
rs4938753	0.94[ASN][1000 genomes]
rs4938755	0.93[ASN][1000 genomes]
rs4938756	0.93[ASN][1000 genomes]
rs7126918	0.94[ASN][1000 genomes]
rs7127194	0.94[ASN][1000 genomes]
rs7929916	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119859000-119867000	Enhancers	Brain Substantia Nigra	brain
2	chr11:119859000-119867600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119859000-119867600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:119860800-119864800	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:119860800-119869400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:119861000-119866400	Enhancers	Esophagus	oesophagus
7	chr11:119861800-119864800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:119862000-119865000	Enhancers	Fetal Muscle Leg	muscle
9	chr11:119862000-119871400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:119862800-119864800	Enhancers	Gastric	stomach
11	chr11:119863400-119865000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:119863600-119866600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:119863800-119864600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:119863800-119865000	Enhancers	Fetal Intestine Large	intestine
15	chr11:119863800-119865200	Enhancers	Fetal Intestine Small	intestine
16	chr11:119864000-119864600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:119864000-119864600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:119864200-119864600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:119864200-119864800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr11:119864200-119867600	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:119864400-119864600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:119864400-119864600	Enhancers	Spleen	Spleen
23	chr11:119864400-119865000	Weak transcription	Brain Angular Gyrus	brain
24	chr11:119864400-119865000	Enhancers	Pancreas	Pancrea
25	chr11:119864400-119865200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:119864400-119865200	Enhancers	Brain Anterior Caudate	brain

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