Variant report

Variant	rs881505
Chromosome Location	chr7:137533216-137533217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:137532864-137533583	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:137528869-137533706	HepG2	liver:	n/a	n/a
3	POLR2A	chr7:137532921-137533755	GM12891	blood:	n/a	n/a
4	POLR2A	chr7:137531524-137533533	U87	brain:	n/a	n/a
5	POLR2A	chr7:137532844-137533672	GM12891	blood:	n/a	n/a
6	POLR2A	chr7:137531676-137533830	GM12878	blood:	n/a	n/a
7	POLR2A	chr7:137533022-137533537	HepG2	liver:	n/a	n/a
8	POLR2A	chr7:137533077-137533839	HepG2	liver:	n/a	n/a
9	POLR2A	chr7:137531957-137533928	K562	blood:	n/a	n/a
10	FOSL2	chr7:137532883-137533345	HepG2	liver:	n/a	n/a
11	POLR2A	chr7:137532793-137533666	GM12891	blood:	n/a	n/a
12	POLR2A	chr7:137531524-137533562	U87	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1D1-5	chr7:137531776-137533814	NONHSAT123588

Variant related genes	Relation type
DGKI	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11975719	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3735020	0.93[CHB][hapmap]
rs61640672	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6467721	0.91[ASN][1000 genomes]
rs6943538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6958842	1.00[CHB][hapmap]
rs6959012	0.94[CHB][hapmap]
rs6976928	0.94[CHB][hapmap]
rs6977828	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137532200-137556400	Weak transcription	Esophagus	oesophagus
2	chr7:137532400-137533600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:137532400-137534800	Weak transcription	NHDF-Ad	bronchial
4	chr7:137532400-137534800	Weak transcription	NHLF	lung
5	chr7:137532400-137536000	Weak transcription	HSMM	muscle
6	chr7:137532400-137536600	Weak transcription	Right Atrium	heart
7	chr7:137532400-137545400	Weak transcription	Aorta	Aorta
8	chr7:137532400-137546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:137532400-137549800	Weak transcription	A549	lung
10	chr7:137532400-137552200	Weak transcription	Pancreas	Pancrea
11	chr7:137532600-137534200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:137532600-137535400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:137532600-137535400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:137532600-137536200	Weak transcription	HSMMtube	muscle
15	chr7:137532600-137536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:137532600-137547200	Weak transcription	Ovary	ovary
17	chr7:137532800-137533400	Enhancers	Brain Substantia Nigra	brain
18	chr7:137532800-137533600	Active TSS	Brain Cingulate Gyrus	brain
19	chr7:137532800-137534800	Weak transcription	NH-A	brain
20	chr7:137532800-137535000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:137532800-137535400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:137532800-137544200	Weak transcription	HepG2	liver
23	chr7:137532800-137546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:137532800-137546600	Weak transcription	Adipose Nuclei	Adipose
25	chr7:137533000-137534800	Weak transcription	Osteobl	bone
26	chr7:137533000-137535400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:137533200-137533400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:137533200-137534800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:137533200-137536200	Weak transcription	Placenta	Placenta

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