Variant report

Variant	rs881938
Chromosome Location	chr2:7111264-7111265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7014977..7017559-chr2:7110921..7112588,2	K562	blood:
2	chr2:7109657..7111337-chr2:7117211..7119899,2	MCF-7	breast:
3	chr2:7104336..7107302-chr2:7109423..7112409,2	K562	blood:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11685858	0.81[CEU][hapmap]
rs1448869	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1448870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2166967	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34393586	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3771999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772000	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4669122	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4669123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55736658	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs771254	0.95[JPT][hapmap]
rs771260	0.81[JPT][hapmap]
rs771269	0.80[JPT][hapmap]
rs771272	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833326	chr2:6985027-7142564	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv2598	chr2:7088737-7133415	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7079000-7113400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:7081400-7112200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:7083800-7129600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:7084200-7122200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:7084600-7112800	Weak transcription	Thymus	Thymus
6	chr2:7085000-7120200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:7096800-7120600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:7097200-7126200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:7098000-7115800	Weak transcription	HepG2	liver
10	chr2:7099000-7123600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:7099400-7112200	Weak transcription	Lung	lung
12	chr2:7101000-7113400	Weak transcription	NHDF-Ad	bronchial
13	chr2:7101000-7117400	Weak transcription	Right Atrium	heart
14	chr2:7101000-7130000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:7101200-7114000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr2:7101200-7116000	Weak transcription	Gastric	stomach
17	chr2:7101200-7117400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:7101200-7126200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:7101200-7144000	Weak transcription	Aorta	Aorta
20	chr2:7101200-7154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr2:7101400-7117200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:7101600-7117200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:7101800-7126200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr2:7102000-7117400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:7102200-7117400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr2:7102400-7112000	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:7102400-7117000	Weak transcription	Fetal Brain Male	brain
28	chr2:7102600-7112400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:7104200-7120600	Strong transcription	Dnd41	blood
30	chr2:7105600-7120600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:7106200-7123200	Strong transcription	Primary T cells from cord blood	blood
32	chr2:7107200-7111600	Weak transcription	Ovary	ovary
33	chr2:7107200-7117000	Weak transcription	Fetal Lung	lung
34	chr2:7108800-7115400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:7109000-7114600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:7109200-7113600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:7109200-7115800	Weak transcription	Left Ventricle	heart
38	chr2:7109200-7116000	Weak transcription	Fetal Heart	heart
39	chr2:7109200-7117400	Weak transcription	Fetal Muscle Leg	muscle
40	chr2:7109200-7137000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr2:7109400-7111600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:7109400-7117400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:7109600-7111400	Weak transcription	Right Ventricle	heart
44	chr2:7109600-7111600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr2:7109600-7111600	Weak transcription	Psoas Muscle	Psoas
46	chr2:7109800-7116000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:7110200-7112000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:7110200-7112600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr2:7110200-7112600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr2:7110400-7111400	Strong transcription	Brain Angular Gyrus	brain

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