Variant report

Variant	rs882135
Chromosome Location	chr10:94518142-94518143
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94517024..94521206-chr10:94522377..94524965,5	K562	blood:
2	chr10:94514784..94516606-chr10:94517572..94519517,2	K562	blood:
3	chr10:94517002..94518734-chr10:94589088..94591962,3	K562	blood:
4	chr10:94350476..94356035-chr10:94515020..94520020,6	K562	blood:
5	chr10:94450040..94451749-chr10:94517680..94520139,2	MCF-7	breast:
6	chr10:94460041..94462879-chr10:94516559..94518364,2	K562	blood:
7	chr10:94348631..94351976-chr10:94517080..94521274,3	K562	blood:
8	chr10:94501170..94503294-chr10:94517655..94519788,2	K562	blood:
9	chr10:94515716..94518429-chr10:94608106..94610155,2	K562	blood:
10	chr10:94448814..94452346-chr10:94514330..94519117,6	K562	blood:
11	chr10:94448776..94451564-chr10:94514826..94518516,6	K562	blood:
12	chr10:94460041..94464293-chr10:94516357..94518364,3	K562	blood:
13	chr10:94517234..94521779-chr10:94589479..94592725,5	K562	blood:
14	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2488061	0.81[AFR][1000 genomes]
rs2488063	0.96[AFR][1000 genomes]
rs2488064	0.82[AFR][1000 genomes]
rs2488069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2488070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2490753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94514800-94518200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:94515600-94518400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:94515600-94518600	Flanking Active TSS	GM12878-XiMat	blood
4	chr10:94515800-94519600	Enhancers	A549	lung
5	chr10:94516200-94518200	Enhancers	Right Atrium	heart
6	chr10:94516400-94518400	Flanking Active TSS	K562	blood
7	chr10:94516600-94518400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:94516800-94518800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:94517000-94521200	Weak transcription	Aorta	Aorta
10	chr10:94517000-94521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:94517200-94520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:94517200-94520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:94517200-94521400	Enhancers	HepG2	liver
14	chr10:94517400-94518200	Enhancers	Hela-S3	cervix
15	chr10:94517400-94518400	Weak transcription	Stomach Mucosa	stomach
16	chr10:94517400-94519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94517400-94520200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:94517400-94520200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:94517400-94520200	Weak transcription	NH-A	brain
20	chr10:94517400-94520200	Weak transcription	Osteobl	bone
21	chr10:94517400-94520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:94517400-94520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:94517400-94520800	Enhancers	Primary B cells from peripheral blood	blood
24	chr10:94517400-94521400	Weak transcription	Brain Angular Gyrus	brain
25	chr10:94517400-94522600	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:94517600-94518400	Enhancers	HUVEC	blood vessel
27	chr10:94517600-94518600	Enhancers	Liver	Liver
28	chr10:94517600-94520200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:94517800-94520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:94517800-94522200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:94518000-94518400	Enhancers	Rectal Smooth Muscle	rectum
32	chr10:94518000-94518800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:94518000-94519800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr10:94518000-94520000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:94518000-94520200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:94518000-94520200	Weak transcription	Adipose Nuclei	Adipose
37	chr10:94518000-94520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:94518000-94520200	Weak transcription	Placenta	Placenta
39	chr10:94518000-94520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:94518000-94520200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:94518000-94520400	Enhancers	Primary B cells from cord blood	blood
42	chr10:94518000-94521400	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:94518000-94521600	Weak transcription	Brain Anterior Caudate	brain
44	chr10:94518000-94521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:94518000-94522800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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