Variant report

Variant	rs882950
Chromosome Location	chr2:125280830-125280831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10187048	0.89[ASN][1000 genomes]
rs10197685	0.92[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12612022	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12711679	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13015323	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4848243	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6541958	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125279200-125284200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:125279400-125281600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:125279400-125281800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:125279600-125282600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:125280000-125290600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:125280400-125281200	Enhancers	Brain Substantia Nigra	brain
7	chr2:125280400-125281800	Weak transcription	Fetal Stomach	stomach
8	chr2:125280600-125281200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr2:125280600-125281200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:125280600-125281600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:125280600-125282200	Enhancers	Brain Hippocampus Middle	brain
12	chr2:125280800-125281800	Weak transcription	Brain Angular Gyrus	brain
13	chr2:125280800-125282600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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