Variant report

Variant	rs883620
Chromosome Location	chr17:66442130-66442131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:66434323..66435984-chr17:66440648..66442906,2	MCF-7	breast:
2	chr17:66441406..66443070-chr17:66508129..66509916,2	MCF-7	breast:
3	chr17:66440316..66443434-chr17:66451433..66455401,3	K562	blood:
4	chr17:66441310..66443712-chr17:66444452..66446594,2	MCF-7	breast:
5	chr17:66441419..66443103-chr17:66452265..66454426,3	K562	blood:
6	chr17:66287131..66289155-chr17:66440685..66442367,2	MCF-7	breast:
7	chr17:66435227..66440274-chr17:66440311..66442952,5	MCF-7	breast:
8	chr17:66418285..66420364-chr17:66441433..66444134,2	K562	blood:
9	chr17:66438851..66440456-chr17:66442013..66443633,2	K562	blood:
10	chr17:66432226..66434123-chr17:66440350..66443035,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000141337	Chromatin interaction
ENSG00000108932	Chromatin interaction
ENSG00000070540	Chromatin interaction
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1030098	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11656906	0.89[EUR][1000 genomes]
rs11867297	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12940626	0.89[EUR][1000 genomes]
rs1808333	0.85[EUR][1000 genomes]
rs2287301	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2302782	0.85[EUR][1000 genomes]
rs2361954	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71378929	0.85[EUR][1000 genomes]
rs918167	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66410400-66452400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:66420800-66446400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr17:66420800-66451800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr17:66425400-66451600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:66425400-66452000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr17:66426000-66445400	Weak transcription	Brain Germinal Matrix	brain
7	chr17:66429800-66444200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr17:66430800-66444200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr17:66432000-66442200	Weak transcription	Colon Smooth Muscle	Colon
10	chr17:66432200-66452400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr17:66432400-66446400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr17:66432600-66444200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr17:66432600-66451600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:66432800-66448200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:66433000-66442800	Weak transcription	NHEK	skin
16	chr17:66433000-66444400	Weak transcription	HMEC	breast
17	chr17:66433000-66451800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr17:66433000-66451800	Weak transcription	Hela-S3	cervix
19	chr17:66434400-66447800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr17:66434400-66450200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:66434600-66449000	Weak transcription	Thymus	Thymus
22	chr17:66434600-66450400	Strong transcription	Osteobl	bone
23	chr17:66434800-66445400	Weak transcription	Esophagus	oesophagus
24	chr17:66434800-66452200	Weak transcription	Dnd41	blood
25	chr17:66434800-66452400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr17:66434800-66452600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr17:66435200-66452200	Weak transcription	Stomach Mucosa	stomach
28	chr17:66435600-66449400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:66435800-66447600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr17:66436000-66449000	Strong transcription	NHLF	lung
31	chr17:66436400-66445400	Weak transcription	Brain Angular Gyrus	brain
32	chr17:66437000-66442200	Strong transcription	Ovary	ovary
33	chr17:66437200-66447000	Strong transcription	HepG2	liver
34	chr17:66437200-66451600	Weak transcription	GM12878-XiMat	blood
35	chr17:66437400-66442600	Weak transcription	HSMM	muscle
36	chr17:66437400-66451600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr17:66437400-66451600	Weak transcription	Small Intestine	intestine
38	chr17:66437600-66442600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr17:66437600-66446400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:66437600-66452800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr17:66437800-66442800	Weak transcription	Fetal Thymus	thymus
42	chr17:66437800-66443200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr17:66437800-66448000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr17:66437800-66448200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr17:66437800-66449200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:66438000-66444200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr17:66438000-66444200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr17:66438000-66444400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr17:66438000-66445400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr17:66438000-66446600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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