Variant report

Variant	rs883734
Chromosome Location	chr10:45468189-45468190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45442718..45444232-chr10:45467688..45470115,2	MCF-7	breast:
2	chr10:45466696..45473467-chr10:45492241..45499604,15	K562	blood:
3	chr10:45463326..45466308-chr10:45468045..45470693,6	MCF-7	breast:
4	chr10:45467811..45472693-chr10:45495081..45499604,7	K562	blood:

Variant related genes	Relation type
ENSG00000107551	Chromatin interaction
ENSG00000165512	Chromatin interaction
ENSG00000165511	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11818604	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11818623	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1888983	0.85[CEU][hapmap]
rs3740094	0.83[ASN][1000 genomes]
rs3740097	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3740098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758401	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs3758402	0.85[CEU][hapmap]
rs3814566	0.85[CEU][hapmap]
rs3829908	0.80[CEU][hapmap]
rs4245615	0.80[CEU][hapmap]
rs4948938	0.85[CEU][hapmap]
rs869156	0.85[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs882845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs883733	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs883735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914701	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs883734	RASSF4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45460000-45470000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45460400-45469800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:45461200-45468200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:45461400-45468400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:45461400-45468600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:45461400-45468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:45461600-45468400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:45461600-45468600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:45462000-45468400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:45462000-45469800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:45462200-45468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:45462800-45468400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:45462800-45469600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:45463600-45468400	Strong transcription	Fetal Intestine Small	intestine
15	chr10:45464000-45468600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:45464200-45468600	Weak transcription	Stomach Mucosa	stomach
17	chr10:45464200-45469400	Weak transcription	NHDF-Ad	bronchial
18	chr10:45464200-45469800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:45464200-45469800	Weak transcription	Osteobl	bone
20	chr10:45464400-45469800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:45464600-45468200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:45464600-45468400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:45464600-45469000	Weak transcription	Small Intestine	intestine
24	chr10:45464600-45469200	Weak transcription	Fetal Lung	lung
25	chr10:45464600-45469400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:45464600-45469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:45464600-45469600	Weak transcription	Fetal Brain Male	brain
28	chr10:45464600-45470000	Weak transcription	Fetal Kidney	kidney
29	chr10:45464600-45470000	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr10:45464800-45468200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:45464800-45468400	Strong transcription	Stomach Smooth Muscle	stomach
32	chr10:45464800-45469400	Genic enhancers	Primary monocytes fromperipheralblood	blood
33	chr10:45464800-45469800	Weak transcription	NHLF	lung
34	chr10:45464800-45470000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:45465000-45468400	Weak transcription	Primary B cells from cord blood	blood
36	chr10:45465000-45468600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:45465000-45468800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:45465000-45469200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:45465000-45469400	Weak transcription	Primary T cells from cord blood	blood
40	chr10:45465000-45469600	Weak transcription	Thymus	Thymus
41	chr10:45465000-45470200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:45465200-45468200	Weak transcription	Fetal Thymus	thymus
43	chr10:45465200-45468600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:45465200-45468600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:45465200-45468600	Weak transcription	Dnd41	blood
46	chr10:45465200-45468800	Genic enhancers	Right Ventricle	heart
47	chr10:45465200-45469000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:45465200-45469200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:45465200-45469400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:45465200-45470000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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