Variant report

Variant	rs884369
Chromosome Location	chr3:147077146-147077147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11720889	0.82[CHB][hapmap]
rs1503732	1.00[YRI][hapmap]
rs16859205	0.83[AFR][1000 genomes]
rs16859208	0.83[AFR][1000 genomes]
rs16859341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2202055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61597405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385588	chr3:146782324-147083081	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147076200-147077200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:147076200-147077400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
3	chr3:147076200-147079600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:147076600-147077600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr3:147076600-147078800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr3:147076800-147077200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr3:147076800-147077600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr3:147076800-147079000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:147077000-147077200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:147077000-147077200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:147077000-147077200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr3:147077000-147077200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:147077000-147077200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:147077000-147077200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:147077000-147077200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
16	chr3:147077000-147077400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
17	chr3:147077000-147077400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr3:147077000-147077600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr3:147077000-147077600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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