Variant report

Variant	rs884525
Chromosome Location	chr10:94180771-94180772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94049828..94052296-chr10:94180154..94181750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2260167	1.00[ASN][1000 genomes]
rs2480303	1.00[ASN][1000 genomes]
rs3118966	1.00[ASN][1000 genomes]
rs74151628	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94179200-94181000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:94179200-94181000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:94179400-94181000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94179600-94180800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr10:94179600-94180800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr10:94179800-94180800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:94179800-94180800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:94179800-94180800	Bivalent/Poised TSS	HepG2	liver
9	chr10:94179800-94181000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:94179800-94181000	Enhancers	Lung	lung
11	chr10:94179800-94181200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:94180000-94180800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr10:94180000-94180800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:94180000-94180800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
15	chr10:94180000-94180800	Bivalent/Poised TSS	Fetal Lung	lung
16	chr10:94180000-94180800	Active TSS	Ovary	ovary
17	chr10:94180000-94180800	Active TSS	Right Ventricle	heart
18	chr10:94180000-94180800	Flanking Active TSS	HUVEC	blood vessel
19	chr10:94180200-94180800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:94180200-94180800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr10:94180200-94180800	Active TSS	Primary B cells from cord blood	blood
22	chr10:94180200-94180800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr10:94180200-94180800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:94180200-94180800	Active TSS	Brain Angular Gyrus	brain
25	chr10:94180200-94180800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
26	chr10:94180200-94180800	Bivalent/Poised TSS	Fetal Brain Female	brain
27	chr10:94180200-94180800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr10:94180200-94180800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr10:94180200-94180800	Active TSS	Right Atrium	heart
30	chr10:94180200-94180800	Bivalent/Poised TSS	Stomach Mucosa	stomach
31	chr10:94180200-94180800	Bivalent/Poised TSS	NH-A	brain
32	chr10:94180200-94180800	Bivalent/Poised TSS	NHEK	skin
33	chr10:94180200-94181000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr10:94180200-94181000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
35	chr10:94180200-94181000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:94180200-94181000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
37	chr10:94180200-94181000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
38	chr10:94180200-94181000	Bivalent/Poised TSS	Fetal Kidney	kidney
39	chr10:94180200-94181000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
40	chr10:94180200-94181000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
41	chr10:94180200-94181000	Flanking Active TSS	GM12878-XiMat	blood
42	chr10:94180200-94181200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
43	chr10:94180400-94180800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr10:94180400-94180800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:94180400-94180800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:94180400-94180800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:94180400-94180800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:94180400-94180800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:94180400-94180800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:94180400-94180800	Flanking Active TSS	Liver	Liver

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