Variant report

Variant	rs884881
Chromosome Location	chr2:9905959-9905960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9904753..9906453-chr2:9909403..9911953,2	MCF-7	breast:
2	chr2:9892015..9895829-chr2:9904744..9907713,4	K562	blood:
3	chr2:9769465..9771983-chr2:9905092..9906674,2	MCF-7	breast:
4	chr2:9901768..9906137-chr2:9907161..9912624,7	K562	blood:
5	chr2:9892015..9894940-chr2:9904744..9907619,3	K562	blood:

Variant related genes	Relation type
ENSG00000134308	Chromatin interaction
ENSG00000243491	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10178017	0.85[CHB][hapmap]
rs10200779	0.80[CHB][hapmap]
rs13007842	0.90[ASN][1000 genomes]
rs13030983	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv470443	chr2:9857018-9975557	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1014911	chr2:9863969-9905959	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv873618	chr2:9870631-9919759	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv873619	chr2:9870631-9956981	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1013969	chr2:9888703-10023951	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv518227	chr2:9893454-9909114	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9898600-9906000	Weak transcription	Lung	lung
2	chr2:9898600-9906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:9898600-9906400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:9898600-9906400	Weak transcription	Placenta	Placenta
5	chr2:9898600-9906800	Enhancers	Fetal Muscle Leg	muscle
6	chr2:9899400-9909200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:9900400-9909400	Weak transcription	Brain Anterior Caudate	brain
8	chr2:9900800-9906200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:9901000-9906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:9901000-9906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:9901000-9906000	Weak transcription	HMEC	breast
12	chr2:9901200-9906800	Enhancers	Fetal Heart	heart
13	chr2:9901400-9906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:9901400-9909400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:9901400-9909400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:9901600-9906200	Weak transcription	Fetal Thymus	thymus
17	chr2:9901800-9910200	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:9902000-9906000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:9902200-9906000	Weak transcription	Fetal Lung	lung
20	chr2:9902200-9906200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:9902400-9906000	Weak transcription	Fetal Brain Male	brain
22	chr2:9903000-9911800	Enhancers	Fetal Intestine Small	intestine
23	chr2:9903200-9906200	Enhancers	K562	blood
24	chr2:9903200-9912000	Enhancers	Fetal Intestine Large	intestine
25	chr2:9903600-9906200	Weak transcription	Right Atrium	heart
26	chr2:9903600-9906400	Weak transcription	Right Ventricle	heart
27	chr2:9903600-9906800	Enhancers	A549	lung
28	chr2:9903600-9910400	Weak transcription	Psoas Muscle	Psoas
29	chr2:9903600-9910800	Weak transcription	Left Ventricle	heart
30	chr2:9904000-9908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr2:9904200-9909400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:9904200-9909600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:9904200-9910000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:9904400-9906400	Enhancers	Small Intestine	intestine
35	chr2:9904400-9906800	Enhancers	Fetal Stomach	stomach
36	chr2:9904600-9906800	Enhancers	Duodenum Mucosa	Duodenum
37	chr2:9904600-9907800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:9904600-9907800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:9904800-9906800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr2:9904800-9907000	Enhancers	Esophagus	oesophagus
41	chr2:9904800-9908000	Weak transcription	Pancreas	Pancrea
42	chr2:9904800-9908000	Weak transcription	Spleen	Spleen
43	chr2:9904800-9910400	Weak transcription	Colon Smooth Muscle	Colon
44	chr2:9904800-9910400	Weak transcription	Hela-S3	cervix
45	chr2:9905000-9906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:9905000-9909200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:9905000-9910000	Weak transcription	Fetal Kidney	kidney
48	chr2:9905000-9910200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:9905200-9913000	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr2:9905400-9906400	Weak transcription	Monocytes-CD14+_RO01746	blood

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