Variant report

Variant	rs886970
Chromosome Location	chr7:148034555-148034556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr7:148034163-148034789	HEK293-T-REx	kidney:	n/a	chr7:148034430-148034439
2	SIN3A	chr7:148034372-148034670	H1-hESC	embryonic stem cell:	n/a	n/a
3	ZNF143	chr7:148034422-148034555	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CNTNAP2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55897101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428189	chr7:147885525-148051226	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1022510	chr7:147989695-148236252	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:148028800-148036000	Enhancers	NHEK	skin
2	chr7:148029000-148036200	Weak transcription	Pancreas	Pancrea
3	chr7:148030800-148036000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:148031200-148036000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:148031200-148036000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:148031200-148036200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:148031600-148035600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:148031600-148035800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:148031600-148036200	Enhancers	HMEC	breast
10	chr7:148032000-148034600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:148032800-148034600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:148033800-148035000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:148034000-148034800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:148034000-148035000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:148034000-148035000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:148034000-148035200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr7:148034000-148036000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:148034200-148034600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:148034200-148034800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr7:148034200-148034800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:148034200-148034800	Flanking Active TSS	Fetal Intestine Large	intestine
22	chr7:148034200-148036000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr7:148034200-148036400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:148034400-148034600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:148034400-148034600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:148034400-148034600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr7:148034400-148034600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
28	chr7:148034400-148034600	Enhancers	Fetal Brain Female	brain
29	chr7:148034400-148034600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr7:148034400-148034600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
31	chr7:148034400-148034800	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr7:148034400-148035000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr7:148034400-148035000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr7:148034400-148035600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:148034400-148036000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr7:148034400-148036400	Bivalent Enhancer	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links