Variant report

Variant	rs887110
Chromosome Location	chr4:15908378-15908379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15884741..15886965-chr4:15906601..15909552,2	MCF-7	breast:
2	chr4:15894317..15897276-chr4:15906145..15908505,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11944611	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12513168	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13103381	0.86[ASN][1000 genomes]
rs2532069	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532070	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7699101	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs997233	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15906600-15909200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:15907000-15908400	Enhancers	Stomach Mucosa	stomach
3	chr4:15907000-15909000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:15907200-15908400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr4:15907200-15908400	Flanking Active TSS	A549	lung
6	chr4:15907200-15908600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:15907400-15908400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr4:15907400-15908600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:15907400-15909000	Enhancers	HMEC	breast
10	chr4:15907800-15908600	Enhancers	Liver	Liver
11	chr4:15907800-15909000	Enhancers	Stomach Smooth Muscle	stomach
12	chr4:15908000-15908400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:15908000-15908400	Enhancers	Placenta	Placenta
14	chr4:15908000-15908400	Flanking Active TSS	NHEK	skin
15	chr4:15908000-15908600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:15908000-15909600	Enhancers	Fetal Stomach	stomach
17	chr4:15908200-15908400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr4:15908200-15908400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:15908200-15908400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:15908200-15908400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:15908200-15908400	Enhancers	Duodenum Mucosa	Duodenum
22	chr4:15908200-15908600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:15908200-15909000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:15908200-15909000	Enhancers	Hela-S3	cervix
25	chr4:15908200-15909400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr4:15908200-15911800	Weak transcription	Esophagus	oesophagus
27	chr4:15908200-15913800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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