Variant report

Variant	rs887119
Chromosome Location	chr19:42094179-42094180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10406853	1.00[AMR][1000 genomes]
rs1962625	1.00[AMR][1000 genomes]
rs1962626	1.00[AMR][1000 genomes]
rs3842957	0.91[EUR][1000 genomes]
rs4802121	1.00[AMR][1000 genomes]
rs6508983	1.00[AMR][1000 genomes]
rs758351	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42084000-42094200	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr19:42087200-42095000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr19:42088600-42094600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr19:42089000-42094200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr19:42089000-42094400	Strong transcription	Primary T cells from cord blood	blood
6	chr19:42089200-42095600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:42089600-42095400	Strong transcription	Primary B cells from cord blood	blood
8	chr19:42089600-42101400	Weak transcription	GM12878-XiMat	blood
9	chr19:42090200-42095400	Strong transcription	Spleen	Spleen
10	chr19:42090400-42094600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr19:42091000-42094200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr19:42091400-42098400	Weak transcription	Gastric	stomach
13	chr19:42092000-42101400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:42092200-42096000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:42092600-42095000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr19:42092600-42096800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr19:42092600-42098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:42093000-42095600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr19:42093400-42097000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr19:42093400-42103800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr19:42093600-42097000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr19:42093600-42103800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr19:42093800-42094600	ZNF genes & repeats	Lung	lung
24	chr19:42093800-42095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:42093800-42097600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr19:42093800-42101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr19:42094000-42101200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr19:42094000-42103800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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