Variant report

Variant	rs887745
Chromosome Location	chr7:127589753-127589754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127291173..127294029-chr7:127587944..127590935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240790	Chromatin interaction
ENSG00000197157	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10215276	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10255861	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10260037	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1075206	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1193334	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1193337	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1362267	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1362897	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419969	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17676908	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17676986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17718395	0.86[AMR][1000 genomes]
rs17733988	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1833147	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3757757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757767	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808057	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3808058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3808073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808084	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808087	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3824000	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6948493	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6963614	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs720300	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73238074	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs759056	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7786041	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs917831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127562200-127589800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:127568200-127594000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:127569800-127615600	Weak transcription	Colonic Mucosa	Colon
4	chr7:127570000-127591400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:127570600-127615600	Weak transcription	Small Intestine	intestine
6	chr7:127570600-127615800	Weak transcription	Esophagus	oesophagus
7	chr7:127570600-127616400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:127570800-127599600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:127570800-127618200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:127571000-127615600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:127571000-127615800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:127571400-127589800	Weak transcription	Fetal Stomach	stomach
13	chr7:127571400-127617800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:127571600-127594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:127571600-127618000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:127571800-127602800	Weak transcription	Aorta	Aorta
17	chr7:127576400-127607000	Weak transcription	Spleen	Spleen
18	chr7:127576400-127615800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:127578200-127616200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:127578800-127600200	Weak transcription	Stomach Mucosa	stomach
21	chr7:127579400-127592600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:127581000-127594200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:127581200-127615400	Weak transcription	Gastric	stomach
24	chr7:127583200-127630600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:127583800-127595800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:127583800-127599000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:127584000-127594000	Weak transcription	Adipose Nuclei	Adipose
28	chr7:127584000-127600000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:127584200-127593400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:127584200-127600000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:127584200-127607000	Weak transcription	Right Ventricle	heart
32	chr7:127584600-127593800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:127584600-127595800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:127584600-127596000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr7:127584600-127596000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:127584600-127607000	Weak transcription	Left Ventricle	heart
37	chr7:127584600-127607000	Weak transcription	Lung	lung
38	chr7:127584600-127609000	Weak transcription	Pancreas	Pancrea
39	chr7:127584600-127612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:127584600-127617800	Weak transcription	Hela-S3	cervix
41	chr7:127584800-127589800	Weak transcription	Placenta	Placenta
42	chr7:127584800-127589800	Weak transcription	Right Atrium	heart
43	chr7:127584800-127593400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:127584800-127595800	Weak transcription	Fetal Thymus	thymus
45	chr7:127585000-127590000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr7:127585000-127607000	Weak transcription	HSMMtube	muscle
47	chr7:127585200-127590400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr7:127585200-127593800	Weak transcription	Primary T cells from cord blood	blood
49	chr7:127585200-127594800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:127585200-127595600	Weak transcription	Fetal Muscle Leg	muscle

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